Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0484171 Helianthus annuus HOM05D005870 ORTHO05D007216 7.0e-82 307.4 171 100.0
Lsat_1_v5_gn_4_141420 Lactuca sativa HOM05D005870 ORTHO05D007216 9.8e-68 260.4 173 86.7
ECA232G4208 Erigeron canadensis HOM05D005870 ORTHO05D007216 1.3e-56 223.4 180 75.6
Dinv13195 Davidia involucrata HOM05D005870 ORTHO05D007216 1.1e-53 213.8 171 74.9
Thecc.01G100700 Theobroma cacao HOM05D005870 ORTHO05D007216 2.4e-50 202.6 174 68.4
Hma1.2p1_0308F.1_g120250 Hydrangea macrophylla HOM05D005870 ORTHO05D007216 3.2e-50 202.2 177 68.4
COL.COLO4_27254 Corchorus olitorius HOM05D005870 ORTHO05D007216 2.1e-49 199.5 174 67.8
Nitab4.5_0006110g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 7.8e-49 197.6 170 69.4
vmacro07307 Vaccinium macrocarpon HOM05D005870 ORTHO05D007216 1.0e-48 197.2 171 70.8
MSTRG.3774 Avicennia marina HOM05D005870 ORTHO05D007216 1.3e-48 196.8 170 67.6
Duzib187G0334 Durio zibethinus HOM05D005870 ORTHO05D007216 2.3e-48 196.1 174 67.8
Nitab4.5_0000033g0220 Nicotiana tabacum HOM05D005870 ORTHO05D007216 6.6e-48 194.5 173 65.9
Nn5g30105 Nelumbo nucifera HOM05D005870 ORTHO05D007216 1.1e-47 193.7 171 65.5
Nitab4.5_0000430g0130 Nicotiana tabacum HOM05D005870 ORTHO05D007216 1.1e-47 193.7 172 68.0
Peaxi162Scf00171g00927 Petunia axillaris HOM05D005870 ORTHO05D007216 1.1e-47 193.7 158 71.5
Carub.0008s2608 Capsella rubella HOM05D005870 ORTHO05D007216 1.5e-47 193.4 176 68.2
Nitab4.5_0004855g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 1.9e-47 193.0 173 67.1
AT5G65220 Arabidopsis thaliana HOM05D005870 ORTHO05D007216 2.5e-47 192.6 176 67.6
CiPaw.04G100500 Carya illinoinensis HOM05D005870 ORTHO05D007216 2.5e-47 192.6 171 67.3
MBI02_g35763_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 2.5e-47 192.6 162 70.4
Oeu002170.1 Olea europaea HOM05D005870 ORTHO05D007216 2.5e-47 192.6 171 66.1
Potri.007G093700 Populus trichocarpa HOM05D005870 ORTHO05D007216 2.5e-47 192.6 156 71.2
Ca_17742_v3 Cicer arietinum L. HOM05D005870 ORTHO05D007216 3.3e-47 192.2 176 67.0
Solyc06g072470.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 3.3e-47 192.2 170 67.1
Sopen06g028840 Solanum pennellii HOM05D005870 ORTHO05D007216 3.3e-47 192.2 170 67.1
PGSC0003DMG400026946 Solanum tuberosum HOM05D005870 ORTHO05D007216 3.3e-47 192.2 170 67.6
AL8G42760 Arabidopsis lyrata HOM05D005870 ORTHO05D007216 4.3e-47 191.8 175 67.4
Nn1g05359 Nelumbo nucifera HOM05D005870 ORTHO05D007216 4.3e-47 191.8 170 65.9
Actinidia20008 Actinidia chinensis HOM05D005870 ORTHO05D007216 5.6e-47 191.4 166 68.1
MD00G1199600 Malus domestica HOM05D005870 ORTHO05D007216 5.6e-47 191.4 170 67.6
TAR381G0757 Trochodendron aralioides HOM05D005870 ORTHO05D007216 7.3e-47 191.0 169 65.7
Atru.chr4.42 Acer truncatum HOM05D005870 ORTHO05D007216 9.6e-47 190.7 176 67.0
Gohir.D11G220900 Gossypium hirsutum HOM05D005870 ORTHO05D007216 9.6e-47 190.7 174 65.5
Gorai.007G237100 Gossypium raimondii HOM05D005870 ORTHO05D007216 9.6e-47 190.7 174 65.5
PGR004G1211 Punica granatum HOM05D005870 ORTHO05D007216 9.6e-47 190.7 168 66.1
Solyc03g097950.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 9.6e-47 190.7 173 67.6
Sopen03g028660 Solanum pennellii HOM05D005870 ORTHO05D007216 9.6e-47 190.7 173 67.6
Gohir.A11G202300 Gossypium hirsutum HOM05D005870 ORTHO05D007216 2.1e-46 189.5 174 65.5
DCAR_014215 Daucus carota HOM05D005870 ORTHO05D007216 3.6e-46 188.7 167 64.1
Migut.H02353 Erythranthe guttata HOM05D005870 ORTHO05D007216 3.6e-46 188.7 172 63.4
Cc07_g15090 Coffea canephora HOM05D005870 ORTHO05D007216 4.7e-46 188.3 181 64.6
QL06p049269 Quercus lobata HOM05D005870 ORTHO05D007216 4.7e-46 188.3 168 65.5
Prupe.6G188000 Prunus persica HOM05D005870 ORTHO05D007216 6.2e-46 188.0 175 63.4
PGSC0003DMG400033691 Solanum tuberosum HOM05D005870 ORTHO05D007216 6.2e-46 188.0 173 67.6
Duzib147G1590 Durio zibethinus HOM05D005870 ORTHO05D007216 8.1e-46 187.6 174 66.1
Ciclev10026623m.g Citrus clementina HOM05D005870 ORTHO05D007216 1.1e-45 187.2 174 64.4
Rhsim10G0163500 Rhododendron simsii HOM05D005870 ORTHO05D007216 1.4e-45 186.8 176 64.8
Sed0015800 Sechium edule HOM05D005870 ORTHO05D007216 1.4e-45 186.8 172 64.0
unitig_747.g21825 Utricularia gibba HOM05D000660 ORTHO05D000766 1.4e-45 186.8 165 66.1
CAN.G65.97 Capsicum annuum HOM05D005870 ORTHO05D007216 1.8e-45 186.4 168 66.7
Manes.13G093516 Manihot esculenta HOM05D005870 ORTHO05D007216 2.4e-45 186.0 148 70.9
Medtr8g090185 Medicago truncatula HOM05D005870 ORTHO05D007216 1.5e-44 183.3 173 64.2
CDE10G0106 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 2.6e-44 182.6 154 65.6
CANSAT01G0848 Cannabis sativa HOM05D005870 ORTHO05D007216 5.8e-44 181.4 159 64.8
TPR.G6297 Trifolium pratense HOM05D005870 ORTHO05D007216 9.9e-44 180.6 165 63.0
Phvul.002G256700 Phaseolus vulgaris HOM05D005870 ORTHO05D007216 1.3e-43 180.3 174 64.4
Cpa.g.sc615.2 Carica papaya HOM05D005870 ORTHO05D007216 1.7e-43 179.9 168 65.5
CARHR279150 Cardamine hirsuta HOM05D005870 ORTHO05D007216 4.9e-43 178.3 172 62.8
SalBow3G2704 Salvia bowleyana HOM05D005870 ORTHO05D007216 6.4e-43 177.9 165 63.0
AUR62003803 Chenopodium quinoa HOM05D005870 ORTHO05D007216 1.9e-42 176.4 165 62.4
Aqoxy6G00780 Aquilegia oxysepala HOM05D005870 ORTHO05D007216 2.4e-42 176.0 164 65.2
Sc03g0002050 Simmondsia chinensis HOM05D005870 ORTHO05D007216 2.4e-42 176.0 145 71.0
VMungo0251G1964 Vigna mungo HOM05D005870 ORTHO05D007216 3.2e-42 175.6 172 62.2
ClCG10G008830 Citrullus lanatus HOM05D005870 ORTHO05D007216 4.2e-42 175.3 172 62.8
Eucgr.I00441 Eucalyptus grandis HOM05D005870 ORTHO05D007216 4.2e-42 175.3 150 68.0
Lj4g0027302 Lotus japonicus HOM05D005870 ORTHO05D007216 4.2e-42 175.3 171 63.2
CDE10G0428 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 5.4e-42 174.9 169 61.5
MBI05_g37050_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 9.3e-42 174.1 112 83.0
EL10Ac6g15115 Beta vulgaris HOM05D005870 ORTHO05D007216 3.5e-41 172.2 165 61.8
FAN23G0590 Fragaria x ananassa HOM05D005870 ORTHO05D007216 7.8e-41 171.0 178 60.7
Thhalv10005022m.g Eutrema salsugineum HOM05D005870 ORTHO05D007216 1.0e-40 170.6 174 60.3
SGA_v2.0_scaffold54G19505 Striga asiatica HOM05D005870 ORTHO05D007216 1.0e-40 170.6 165 64.2
Lalb_Chr12g0203881 Lupinus albus HOM05D005870 ORTHO05D007216 1.7e-40 169.9 173 60.7
THA.LOC104801696 Tarenaya hassleriana HOM05D005870 ORTHO05D007216 3.0e-40 169.1 151 66.2
BcaB07g34228 Brassica carinata HOM05D005870 ORTHO05D007216 5.1e-40 168.3 164 62.8
Glyma.05G178000 Glycine max HOM05D005870 ORTHO05D007216 5.1e-40 168.3 175 61.1
BcaC01g02758 Brassica carinata HOM05D005870 ORTHO05D007216 8.7e-40 167.5 147 65.3
BolC3t18343H Brassica oleracea HOM05D005870 ORTHO05D007216 8.7e-40 167.5 147 65.3
Glyma.08G135000 Glycine max HOM05D005870 ORTHO05D007216 8.7e-40 167.5 174 61.5
RcHm_v2.0_Chr2g0113161 Rosa chinensis HOM05D005870 ORTHO05D007216 8.7e-40 167.5 175 60.0
Lalb_Chr07g0185191 Lupinus albus HOM05D005870 ORTHO05D007216 1.5e-39 166.8 175 57.7
Aa31LG1G16740 Aethionema arabicum HOM05D005870 ORTHO05D007216 1.9e-39 166.4 176 60.2
FvH4_1g20710 Fragaria vesca HOM05D005870 ORTHO05D007216 2.5e-39 166.0 178 57.9
Sp2g28320 Schrenkiella parvula HOM05D005870 ORTHO05D007216 3.3e-39 165.6 177 58.2
Lj2A546G34 Lonicera japonica HOM05D005870 ORTHO05D007216 4.3e-39 165.2 145 68.3
BcaB02g09886 Brassica carinata HOM05D005870 ORTHO05D007216 5.6e-39 164.9 174 59.2
FAN19G2750 Fragaria x ananassa HOM05D005870 ORTHO05D007216 7.3e-39 164.5 178 57.9
FAN26G0235 Fragaria x ananassa HOM05D005870 ORTHO05D007216 7.3e-39 164.5 178 59.0
C03p60860 Brassica napus HOM05D005870 ORTHO05D007216 9.6e-39 164.1 175 58.9
MD01G1031300 Malus domestica HOM05D005870 ORTHO05D007216 9.6e-39 164.1 172 61.0
A02p43790 Brassica napus HOM05D005870 ORTHO05D007216 1.6e-38 163.3 165 58.8
BraA02t09303Z Brassica rapa HOM05D005870 ORTHO05D007216 1.6e-38 163.3 165 58.8
FAN28G1626 Fragaria x ananassa HOM05D005870 ORTHO05D007216 1.6e-38 163.3 178 58.4
CsaV3_4G008900 Cucumis sativus L. HOM05D005870 ORTHO05D007216 2.1e-38 162.9 152 63.8
TWI74G0695 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 2.8e-38 162.5 177 61.0
TWI53G1299 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 6.2e-38 161.4 155 64.5
A06p32070 Brassica napus HOM05D005870 ORTHO05D007216 1.4e-37 160.2 172 58.7
BraA06t26136Z Brassica rapa HOM05D005870 ORTHO05D007216 1.4e-37 160.2 172 58.7
PSO447G0167 Papaver somniferum HOM05D005870 ORTHO05D007216 5.3e-37 158.3 172 57.6
arahy.Tifrunner.gnm1.ann1.K43FII Arachis hypogaea HOM05D005870 ORTHO05D007216 9.0e-37 157.5 150 62.0
arahy.Tifrunner.gnm1.ann1.Q6429D Arachis hypogaea HOM05D005870 ORTHO05D007216 1.2e-36 157.1 150 62.0
PSO210G6840 Papaver somniferum HOM05D005870 ORTHO05D007216 1.2e-36 157.1 172 57.0
AUR62001999 Chenopodium quinoa HOM05D005870 ORTHO05D007216 3.4e-36 155.6 165 57.0
Os02g0754300 Oryza sativa ssp. japonica HOM05D005870 ORTHO05D007216 2.1e-33 146.4 168 53.6
Psat7g055240 Pisum sativum HOM05D005870 ORTHO05D007216 2.1e-33 146.4 150 56.7
Sabra07G0077600 Salix brachista HOM05D005870 ORTHO05D007216 3.5e-33 145.6 269 40.5
MELO3C018954.2 Cucumis melo HOM05D005870 ORTHO05D007216 1.0e-32 144.1 152 59.2
Zm00001eb249540 Zea mays HOM05D005870 ORTHO05D007216 3.3e-31 139.0 104 70.2
Hund13620 Selenicereus undatus HOM05D005870 ORTHO05D007216 4.3e-31 138.7 142 59.9
Zm00001eb194130 Zea mays HOM05D005870 ORTHO05D007216 5.6e-31 138.3 99 72.7
Zm00001eb255290 Zea mays HOM05D005870 ORTHO05D007216 2.8e-30 136.0 104 68.3
Zm00001eb335180 Zea mays HOM05D005870 ORTHO05D007216 2.8e-30 136.0 104 68.3
Hund16294 Selenicereus undatus HOM05D005870 ORTHO05D007216 1.2e-28 130.6 188 48.9
Pp3c9_19800 Physcomitrium patens HOM05D005870 ORTHO05D007216 1.1e-26 124.0 106 63.2
AagrBONN_evm.TU.Sc2ySwM_117.2528 Anthoceros agrestis HOM05D005870 ORTHO05D007216 7.1e-26 121.3 134 53.0
GSVIVG01004857001 Vitis vinifera HOM05D005870 ORTHO05D007216 4.6e-25 118.6 79 81.0
GSVIVG01013304001 Vitis vinifera HOM05D005870 ORTHO05D007216 4.6e-25 118.6 79 81.0
Mapoly0011s0026 Marchantia polymorpha HOM05D005870 ORTHO05D007216 7.9e-25 117.9 132 48.5
SMO347G0042 Selaginella moellendorffii HOM05D005870 ORTHO05D007216 5.1e-24 115.2 111 55.0
Cfa002651 Carpinus fangiana HOM05D005870 ORTHO05D007216 8.7e-24 114.4 118 61.9
Haze_24920 Corylus avellana HOM05D005870 ORTHO05D007216 4.3e-23 112.1 114 62.3
MSTRG.15716 Avicennia marina HOM05D005870 ORTHO05D007216 1.3e-22 110.5 103 64.1
SGA_v2.0_scaffold111G31512 Striga asiatica HOM05D005870 ORTHO05D007216 1.6e-22 110.2 112 61.6
Actinidia06560 Actinidia chinensis HOM05D005870 ORTHO05D007216 3.7e-22 109.0 110 61.8
HPP92_013107 Vanilla planifolia HOM05D005870 ORTHO05D007216 2.4e-21 106.3 97 57.7
Lj5C62T6 Lonicera japonica HOM05D005870 ORTHO05D007216 3.5e-17 92.4 76 71.1
CBR_g8034 Chara braunii HOM05D005870 ORTHO05D007216 4.6e-17 92.0 99 46.5
HPP92_013094 Vanilla planifolia HOM05D005870 ORTHO05D007216 1.1e-15 87.4 58 72.4
ATR0782G037 Amborella trichopoda HOM05D005870 ORTHO05D007216 1.9e-15 86.7 86 60.5
Haze_24918 Corylus avellana HOM05D009730 ORTHO05D000126 5.3e-13 78.6 57 66.7
BolC2t12461H Brassica oleracea HOM05D005870 ORTHO05D007216 1.5e-12 77.0 55 78.2
MBI18_g38162_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 1.9e-10 70.1 80 55.0
C02p63940 Brassica napus HOM05D000382 ORTHO05D000391 6.1e-09 65.1 62 61.3
MCO09G004 Micromonas commoda HOM05D005870 ORTHO05D007216 5.1e-08 62.0 75 40.0
Lj1P1094T14 Lonicera japonica HOM05D005870 ORTHO05D007216 8.2e-06 54.7 51 60.8


User provided reference genes

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