Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 1.7e-38 162.2 78 100.0
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 3.6e-25 117.9 58 94.8
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 1.4e-24 115.9 55 96.4
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 8.8e-24 113.2 55 92.7
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 9.5e-18 93.2 56 69.6
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 1.2e-17 92.8 55 70.9
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 1.6e-17 92.4 55 74.5
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 1.0e-16 89.7 55 67.3
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 1.4e-16 89.4 55 65.5
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 2.3e-16 88.6 55 67.3
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 3.0e-16 88.2 55 69.1
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 3.0e-16 88.2 55 69.1
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 6.8e-16 87.0 56 67.9
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 6.8e-16 87.0 55 67.3
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 8.9e-16 86.7 55 65.5
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 1.5e-15 85.9 55 65.5
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.5e-15 85.9 55 67.3
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 2.6e-15 85.1 55 63.6
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.6e-15 85.1 55 65.5
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.6e-15 85.1 55 65.5
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 3.4e-15 84.7 55 65.5
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 4.4e-15 84.3 55 65.5
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.4e-15 84.3 55 65.5
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.4e-15 84.3 55 65.5
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 4.4e-15 84.3 55 65.5
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 7.5e-15 83.6 55 65.5
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 7.5e-15 83.6 55 63.6
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 9.8e-15 83.2 55 67.3
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 9.8e-15 83.2 55 65.5
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 9.8e-15 83.2 55 63.6
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 9.8e-15 83.2 55 63.6
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.3e-14 82.8 55 63.6
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.3e-14 82.8 55 63.6
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.7e-14 82.4 56 64.3
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.2e-14 82.0 55 63.6
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 3.7e-14 81.3 55 61.8
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 4.9e-14 80.9 55 61.8
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 6.3e-14 80.5 57 59.6
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 6.3e-14 80.5 55 58.2
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 8.3e-14 80.1 55 61.8
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 1.1e-13 79.7 55 61.8
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.1e-13 79.7 57 63.2
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 1.4e-13 79.3 55 58.2
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 1.8e-13 79.0 55 58.2
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 1.8e-13 79.0 55 60.0
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 1.8e-13 79.0 59 61.0
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 2.4e-13 78.6 55 60.0
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 2.4e-13 78.6 55 58.2
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 2.4e-13 78.6 56 64.3
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 4.1e-13 77.8 55 58.2
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 5.4e-13 77.4 55 63.6
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 5.4e-13 77.4 55 58.2
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 7.0e-13 77.0 55 58.2
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 7.0e-13 77.0 55 58.2
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 7.0e-13 77.0 55 58.2
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 7.0e-13 77.0 55 56.4
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 9.2e-13 76.6 55 60.0
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 9.2e-13 76.6 55 58.2
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 1.2e-12 76.3 55 58.2
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 1.2e-12 76.3 55 61.8
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 1.6e-12 75.9 48 64.6
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 2.0e-12 75.5 48 62.5
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 2.7e-12 75.1 57 57.9
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 4.6e-12 74.3 55 56.4
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 5.9e-12 73.9 59 55.9
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 1.0e-11 73.2 48 64.6
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 1.3e-11 72.8 55 52.7
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 1.3e-11 72.8 55 54.5
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 1.7e-11 72.4 59 52.5
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 2.3e-11 72.0 58 55.2
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 2.9e-11 71.6 51 58.8
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 3.9e-11 71.2 55 56.4
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 5.0e-11 70.9 55 52.7
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 5.0e-11 70.9 66 53.0
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 5.0e-11 70.9 48 58.3
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 5.0e-11 70.9 48 64.6
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 6.6e-11 70.5 55 58.2
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 6.6e-11 70.5 55 56.4
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 6.6e-11 70.5 55 56.4
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 6.6e-11 70.5 55 54.5
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 8.6e-11 70.1 55 56.4
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 8.6e-11 70.1 55 56.4
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 8.6e-11 70.1 55 56.4
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 1.1e-10 69.7 55 56.4
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 1.1e-10 69.7 55 56.4
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 1.5e-10 69.3 49 63.3
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 1.5e-10 69.3 49 63.3
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 1.5e-10 69.3 55 54.5
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 1.5e-10 69.3 51 64.7
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.9e-10 68.9 55 52.7
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 1.9e-10 68.9 58 56.9
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 2.5e-10 68.6 60 51.7
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 3.3e-10 68.2 55 54.5
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 3.3e-10 68.2 55 49.1
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.3e-10 67.8 42 69.0
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 4.3e-10 67.8 61 54.1
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 7.3e-10 67.0 60 50.0
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 7.3e-10 67.0 60 50.0
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 9.5e-10 66.6 56 60.7
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 9.5e-10 66.6 56 53.6
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 1.6e-09 65.9 55 52.7
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 2.8e-09 65.1 51 51.0
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 4.7e-09 64.3 61 54.1
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 4.7e-09 64.3 75 42.7
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 1.4e-08 62.8 62 46.8
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 1.8e-08 62.4 53 56.6
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 4.0e-08 61.2 55 50.9
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 4.4e-07 57.8 56 53.6
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 3.7e-06 54.7 55 43.6


User provided reference genes

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