Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 7.6e-115 417.2 208 100.0
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 5.3e-92 341.3 244 75.8
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 2.0e-62 243.0 248 56.9
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 5.2e-55 218.4 254 50.0
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 7.5e-54 214.5 244 51.2
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.0e-50 204.1 239 51.0
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 4.4e-38 162.2 241 46.9
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 4.4e-38 162.2 219 51.1
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.2e-37 159.8 251 44.6
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.9e-37 159.5 242 44.6
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 8.3e-37 157.9 241 46.5
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 1.1e-36 157.5 241 46.5
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.1e-36 157.5 247 44.9
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 1.4e-36 157.1 234 45.3
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 2.4e-36 156.4 234 46.2
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 3.2e-36 156.0 198 54.5
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 7.1e-36 154.8 252 46.4
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 9.2e-36 154.5 253 41.9
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 2.1e-35 153.3 240 43.8
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.5e-35 152.5 246 44.3
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 4.6e-35 152.1 249 44.2
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 3.0e-34 149.4 192 53.6
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.9e-34 149.1 230 45.7
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 3.9e-34 149.1 244 43.4
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 3.9e-34 149.1 230 43.5
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 5.1e-34 148.7 242 45.0
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 8.6e-34 147.9 244 43.4
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.5e-33 147.1 241 44.8
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 1.5e-33 147.1 201 51.7
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.9e-33 146.7 201 49.3
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 3.3e-33 146.0 234 45.3
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 3.3e-33 146.0 244 43.0
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 3.3e-33 146.0 196 50.5
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 4.3e-33 145.6 194 50.5
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 4.3e-33 145.6 272 42.3
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 4.3e-33 145.6 180 53.3
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 5.6e-33 145.2 254 42.5
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 5.6e-33 145.2 180 51.7
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 7.3e-33 144.8 180 50.6
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 7.3e-33 144.8 180 52.2
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 7.3e-33 144.8 239 44.8
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 9.5e-33 144.4 171 56.1
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 9.5e-33 144.4 228 44.3
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 9.5e-33 144.4 172 55.8
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.2e-32 144.1 227 44.1
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 2.8e-32 142.9 242 45.0
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 2.8e-32 142.9 180 50.6
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.8e-32 142.9 230 45.2
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.6e-32 142.5 227 44.1
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 8.1e-32 141.4 170 53.5
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 8.1e-32 141.4 225 44.9
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.1e-31 141.0 180 49.4
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.1e-31 141.0 180 49.4
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 1.8e-31 140.2 240 42.1
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 5.2e-31 138.7 176 50.0
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 5.2e-31 138.7 260 41.9
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 6.8e-31 138.3 233 42.9
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 8.9e-31 137.9 200 46.5
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 1.2e-30 137.5 175 48.0
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.5e-30 137.1 171 50.9
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 2.6e-30 136.3 224 40.6
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 2.6e-30 136.3 194 50.0
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 3.4e-30 136.0 189 49.7
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 9.9e-30 134.4 163 56.4
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 9.9e-30 134.4 178 50.0
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-29 134.0 163 55.2
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-29 134.0 163 55.2
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 1.7e-29 133.7 168 50.6
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.7e-29 133.7 163 55.8
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.7e-29 133.7 163 55.8
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.7e-29 133.7 222 46.4
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.9e-29 132.9 163 54.6
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 4.9e-29 132.1 192 48.4
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 4.9e-29 132.1 233 42.9
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 6.4e-29 131.7 192 49.5
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.4e-29 131.3 163 55.2
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 8.4e-29 131.3 179 49.7
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 8.4e-29 131.3 169 51.5
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.9e-28 130.2 201 46.8
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 4.2e-28 129.0 214 45.3
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 4.2e-28 129.0 224 41.5
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 5.4e-28 128.6 144 54.9
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 5.4e-28 128.6 144 54.9
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 5.4e-28 128.6 144 54.9
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.4e-28 128.6 163 54.6
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 5.4e-28 128.6 202 46.0
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 7.1e-28 128.3 185 48.6
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 7.1e-28 128.3 285 38.6
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 9.2e-28 127.9 169 53.3
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 9.2e-28 127.9 201 45.3
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.2e-27 127.5 163 54.6
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-27 127.5 163 54.6
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.2e-27 127.5 155 55.5
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 1.6e-27 127.1 145 54.5
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 1.6e-27 127.1 185 48.6
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.6e-27 127.1 159 54.7
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 2.1e-27 126.7 192 48.4
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 2.7e-27 126.3 201 47.3
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 3.5e-27 125.9 192 47.9
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 3.5e-27 125.9 192 48.4
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 3.5e-27 125.9 170 50.0
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.6e-27 125.6 182 48.9
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 6.0e-27 125.2 177 50.8
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 6.0e-27 125.2 184 46.7
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 6.0e-27 125.2 197 45.2
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 7.8e-27 124.8 177 50.8
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 7.8e-27 124.8 177 50.8
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 7.8e-27 124.8 201 42.8
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 7.8e-27 124.8 155 54.2
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.0e-26 124.4 169 50.3
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.0e-26 124.4 174 48.9
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.0e-26 124.4 174 48.9
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 1.0e-26 124.4 170 51.2
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.7e-26 123.6 187 48.1
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 2.3e-26 123.2 197 46.2
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 8.7e-26 121.3 200 46.0
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.1e-25 120.9 188 46.8
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 1.5e-25 120.6 190 45.8
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 1.5e-25 120.6 166 47.6
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 1.5e-25 120.6 220 40.5
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 2.5e-25 119.8 166 47.6
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 3.3e-25 119.4 151 52.3
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 5.6e-25 118.6 234 39.3
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 7.3e-25 118.2 197 46.2
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 9.6e-25 117.9 179 44.7
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 1.2e-24 117.5 162 48.8
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 1.6e-24 117.1 207 45.4
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 2.1e-24 116.7 181 45.3
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 3.6e-24 115.9 180 45.6
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 4.7e-24 115.5 171 44.4
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 8.1e-24 114.8 162 48.1
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 8.1e-24 114.8 143 51.7
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 1.8e-23 113.6 205 42.9
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.4e-23 113.2 179 45.3
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 4.0e-23 112.5 193 44.6
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.3e-23 112.1 211 39.8
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 5.3e-23 112.1 185 42.2
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 6.9e-23 111.7 222 41.0
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.2e-22 110.9 193 44.6
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 5.8e-22 108.6 151 44.4
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.7e-21 107.1 210 39.5
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.2e-21 106.7 154 47.4
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 2.9e-21 106.3 172 41.9
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 3.8e-21 105.9 176 45.5
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 4.9e-21 105.5 172 43.0
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.9e-20 103.6 173 41.6
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 5.4e-20 102.1 154 42.2
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.2e-19 100.9 96 60.4
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 4.6e-19 99.0 173 40.5
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 6.0e-19 98.6 174 40.8
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.0e-18 97.8 218 38.5
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 1.0e-18 97.8 217 38.2
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.9e-18 95.9 214 36.9
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 2.5e-17 93.2 143 41.3
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.3e-17 92.8 152 42.1
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 9.6e-17 91.3 176 37.5
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 2.1e-16 90.1 164 38.4
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 1.4e-15 87.4 133 43.6
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.4e-15 86.7 146 39.0
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 1.2e-14 84.3 192 36.5
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.5e-14 84.0 204 36.8
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.0e-14 83.6 196 36.7
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 1.3e-13 80.9 162 37.0
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 2.9e-13 79.7 72 59.7
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 8.4e-13 78.2 163 35.6
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.1e-12 77.8 169 33.1
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 1.9e-12 77.0 149 39.6
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 1.6e-11 73.9 173 34.1
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 4.6e-11 72.4 274 29.9
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 2.3e-10 70.1 53 71.7
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 3.7e-08 62.8 186 31.2
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 8.1e-08 61.6 162 34.6
BolC7t41959H Brassica oleracea HOM05D003503 ORTHO05D003885 1.8e-07 60.5 113 41.6
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.8e-07 60.5 60 56.7
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 3.1e-07 59.7 178 33.1
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 5.3e-07 58.9 87 46.0
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 5.3e-07 58.9 106 38.7
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 6.9e-07 58.5 86 46.5
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 9.0e-07 58.2 95 43.2
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 9.0e-07 58.2 181 29.8
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 3.4e-06 56.2 179 32.4
ECA234G0160 Erigeron canadensis HOM05D003503 ORTHO05D003885 4.5e-06 55.8 53 64.2


User provided reference genes

Program Settings