Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 0.0e+00 1140.9 587 100.0
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 0.0e+00 1078.2 587 94.7
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 4.2e-235 818.1 594 75.3
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 8.3e-199 697.6 597 67.2
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 1.7e-143 513.8 641 53.0
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 3.2e-142 509.6 661 51.1
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.2e-133 481.1 652 50.0
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.6e-133 480.7 653 48.7
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 6.0e-133 478.8 659 48.6
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 1.5e-131 474.2 659 49.0
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 1.5e-131 474.2 662 49.1
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 7.1e-126 455.3 656 47.4
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 2.1e-125 453.8 649 47.6
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 7.9e-125 451.8 641 48.4
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 2.3e-124 450.3 649 46.2
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 1.5e-123 447.6 655 47.2
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 2.5e-123 446.8 617 49.3
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 4.3e-123 446.0 656 46.8
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 3.7e-122 443.0 646 45.7
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 7.6e-120 435.3 650 47.4
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 8.4e-119 431.8 655 46.1
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 5.5e-118 429.1 643 45.9
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 4.6e-117 426.0 647 45.7
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 1.0e-116 424.9 650 46.9
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 1.6e-114 417.5 656 44.4
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 2.2e-114 417.2 659 45.7
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 2.8e-114 416.8 659 45.5
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 4.8e-114 416.0 649 44.8
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 1.1e-113 414.8 653 46.6
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.2e-112 411.4 649 45.1
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 1.2e-112 411.4 649 45.1
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 2.0e-112 410.6 684 42.5
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 7.7e-112 408.7 659 44.3
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 2.2e-111 407.1 645 45.3
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 5.0e-111 406.0 654 43.6
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 8.5e-111 405.2 643 45.9
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 5.5e-110 402.5 653 43.5
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.6e-109 401.0 645 45.3
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 2.7e-109 400.2 653 44.7
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 6.1e-109 399.1 644 45.3
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 7.9e-109 398.7 658 43.8
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 1.1e-107 394.8 663 43.9
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 1.5e-107 394.4 664 42.5
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 1.5e-107 394.4 644 45.2
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 2.0e-107 394.0 658 43.6
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 3.3e-107 393.3 658 44.5
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 3.3e-107 393.3 648 45.1
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 9.7e-107 391.7 658 43.5
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 2.2e-106 390.6 665 43.3
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 8.2e-106 388.7 643 44.6
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 4.1e-105 386.3 632 45.7
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 4.1e-105 386.3 662 43.1
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 5.3e-105 386.0 656 42.2
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 3.4e-104 383.3 690 42.5
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 5.9e-104 382.5 653 44.1
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 5.9e-104 382.5 672 42.4
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 1.3e-103 381.3 714 40.6
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 1.7e-103 380.9 643 43.7
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 3.8e-103 379.8 647 43.4
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 1.1e-102 378.3 649 44.7
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 1.2e-101 374.8 521 47.6
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 4.7e-101 372.9 661 43.0
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 6.1e-101 372.5 610 44.6
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 6.1e-101 372.5 660 42.9
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 8.8e-100 368.6 643 43.1
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 1.1e-99 368.2 642 43.5
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 1.1e-99 368.2 647 42.8
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 3.3e-99 366.7 628 43.2
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 3.1e-97 360.1 659 42.2
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 3.1e-97 360.1 640 43.4
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 3.1e-97 360.1 640 43.4
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 9.1e-97 358.6 648 42.3
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 4.5e-96 356.3 692 40.6
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 5.9e-96 355.9 663 40.9
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 1.8e-92 344.4 662 41.4
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 3.0e-92 343.6 643 41.2
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 6.7e-92 342.4 658 40.3
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 3.3e-91 340.1 678 38.3
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 5.9e-88 329.3 657 39.4
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 6.5e-87 325.9 438 47.5
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 4.2e-86 323.2 635 39.8
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 7.2e-86 322.4 567 40.7
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 9.4e-86 322.0 654 39.8
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 5.4e-81 306.2 638 36.7
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 4.5e-80 303.1 646 37.6
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 8.5e-79 298.9 634 39.7
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 3.2e-78 297.0 511 40.3
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 5.5e-78 296.2 612 39.4
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 9.5e-78 295.4 623 38.0
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.2e-77 295.0 540 41.5
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 4.7e-77 293.1 627 39.4
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 3.0e-76 290.4 459 44.4
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 5.2e-76 289.7 628 39.2
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 5.2e-76 289.7 693 37.2
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 6.8e-76 289.3 615 38.5
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 2.6e-75 287.3 623 37.6
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 9.8e-75 285.4 624 38.9
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 1.3e-74 285.0 463 42.3
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 1.7e-74 284.6 630 38.9
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.1e-73 282.0 507 43.2
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 2.4e-73 280.8 635 37.6
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 3.5e-72 276.9 644 35.9
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 4.5e-72 276.6 629 37.5
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 1.3e-71 275.0 521 39.9
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 6.6e-71 272.7 764 34.2
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 1.5e-70 271.6 623 37.6
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 9.5e-70 268.9 599 39.2
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 4.0e-68 263.5 664 36.4
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 4.0e-68 263.5 632 38.4
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 2.0e-67 261.2 458 42.1
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 1.7e-66 258.1 638 37.3
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 3.7e-66 256.9 632 37.7
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 2.4e-65 254.2 619 38.3
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 2.4e-65 254.2 633 36.2
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 1.2e-64 251.9 449 40.5
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 1.3e-63 248.4 481 40.5
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 2.6e-59 234.2 656 36.4
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 6.0e-56 223.0 586 33.1
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 4.7e-53 213.4 635 33.1
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 8.9e-52 209.1 626 34.8
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 4.9e-50 203.4 455 36.5
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 1.2e-48 198.7 338 42.9
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 8.6e-47 192.6 434 36.4
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.9e-46 191.4 174 59.8
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 9.5e-46 189.1 739 31.8
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 1.9e-38 164.9 133 62.4
Cpa.g.sc81.1 Carica papaya HOM05D005409 ORTHO05D006456 1.9e-30 138.3 184 52.2
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 2.5e-30 137.9 264 40.9
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 3.9e-23 114.0 405 31.9
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 3.3e-22 110.9 711 25.7
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 3.8e-18 97.4 107 51.4
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 1.4e-17 95.5 294 33.0
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 6.7e-15 86.7 193 37.8
Atru.chr6.3115 Acer truncatum HOM05D005409 ORTHO05D006456 3.1e-12 77.8 190 36.3
Actinidia26960 Actinidia chinensis HOM05D005409 ORTHO05D006456 4.0e-12 77.4 86 57.0
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 2.9e-10 71.2 110 40.0
Haze_06667 Corylus avellana HOM05D005409 ORTHO05D006456 2.1e-08 65.1 179 33.0
SEGI_29006 Sequoiadendron giganteum HOM05D005409 ORTHO05D006456 2.7e-08 64.7 248 30.6


User provided reference genes

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