Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 0.0e+00 1133.2 581 100.0
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 0.0e+00 1078.9 587 94.7
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 2.8e-231 805.4 594 74.2
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 4.5e-197 691.8 592 67.1
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 1.7e-143 513.8 641 53.0
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 2.1e-138 496.9 661 50.7
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.4e-134 484.2 650 49.4
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.3e-132 477.6 653 48.2
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 2.3e-132 476.9 655 47.6
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 8.1e-130 468.4 656 47.6
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 8.9e-129 464.9 659 48.0
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 9.2e-126 454.9 649 47.6
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 1.9e-123 447.2 642 48.1
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 3.3e-123 446.4 649 46.4
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 4.3e-123 446.0 655 46.7
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 3.6e-122 443.0 616 48.7
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 8.1e-122 441.8 659 46.1
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.5e-120 437.6 656 46.3
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 4.9e-119 432.6 645 46.0
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 5.4e-118 429.1 655 46.0
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 6.0e-117 425.6 649 45.1
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 2.5e-115 420.2 650 45.5
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 4.3e-115 419.5 650 46.6
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 1.4e-113 414.5 644 45.3
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 2.0e-112 410.6 656 44.5
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 4.4e-112 409.5 649 44.7
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 7.6e-112 408.7 659 44.9
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 9.9e-112 408.3 648 44.8
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 9.9e-112 408.3 648 44.8
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 2.2e-111 407.1 659 44.8
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 3.8e-111 406.4 645 45.7
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 6.4e-111 405.6 663 44.5
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 1.1e-110 404.8 653 45.9
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 1.9e-110 404.1 643 45.3
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 2.4e-110 403.7 682 42.5
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 5.1e-108 396.0 653 43.0
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 2.5e-107 393.7 649 43.9
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 4.3e-107 392.9 655 43.7
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 7.3e-107 392.1 667 43.2
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 7.3e-107 392.1 653 43.0
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 9.6e-107 391.7 645 44.3
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.3e-106 391.3 631 44.8
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 2.8e-106 390.2 664 42.8
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 1.4e-105 387.9 653 44.3
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 1.4e-105 387.9 653 44.6
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 3.1e-105 386.7 664 42.6
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 6.9e-105 385.6 644 43.5
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 3.4e-104 383.3 630 46.3
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 4.5e-104 382.9 658 42.6
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 1.7e-103 380.9 646 43.7
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.7e-103 380.9 659 43.2
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 3.8e-103 379.8 643 43.5
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 3.8e-103 379.8 654 42.8
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 6.4e-103 379.0 671 42.6
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 1.4e-102 377.9 657 42.6
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 1.9e-102 377.5 666 42.9
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 2.4e-102 377.1 690 42.0
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 6.0e-101 372.5 651 44.1
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 2.3e-100 370.5 522 47.3
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 2.3e-100 370.5 646 43.3
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 2.3e-100 370.5 712 40.3
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 5.1e-100 369.4 610 45.1
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 8.7e-100 368.6 655 42.7
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 8.7e-100 368.6 643 42.6
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 4.3e-99 366.3 661 42.4
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 2.1e-98 364.0 643 42.3
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 3.1e-97 360.1 643 43.4
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 4.0e-97 359.8 643 43.4
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 5.3e-97 359.4 654 40.8
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 1.5e-96 357.8 672 41.2
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 3.4e-96 356.7 654 42.0
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 1.3e-95 354.8 631 43.1
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 2.9e-95 353.6 642 42.2
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 1.0e-92 345.1 657 41.4
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 1.3e-92 344.7 687 39.7
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 4.3e-91 339.7 643 41.4
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 2.1e-90 337.4 679 38.1
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 4.8e-90 336.3 657 40.5
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.7e-87 327.8 639 40.2
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 4.9e-87 326.2 564 42.0
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.9e-86 324.3 434 47.2
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 3.0e-84 317.0 655 38.5
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 9.7e-83 312.0 650 40.2
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 3.8e-79 300.1 622 38.3
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 8.5e-79 298.9 633 39.5
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 5.5e-78 296.2 638 36.4
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 1.2e-77 295.0 650 37.1
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 3.6e-77 293.5 515 39.6
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 4.6e-77 293.1 631 38.2
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 1.4e-76 291.6 613 39.0
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 3.9e-76 290.0 613 39.5
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 8.8e-76 288.9 619 37.6
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.1e-75 288.5 629 38.5
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 1.5e-75 288.1 632 38.6
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 2.5e-75 287.3 700 37.1
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 5.7e-75 286.2 463 42.5
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 6.3e-74 282.7 540 40.9
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 1.1e-73 282.0 627 37.2
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 1.5e-72 278.1 635 37.5
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 1.3e-71 275.0 635 36.9
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 1.7e-71 274.6 459 41.6
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 2.2e-71 274.2 500 40.0
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 3.8e-71 273.5 759 33.7
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.4e-70 271.6 507 42.6
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 1.9e-70 271.2 629 36.7
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 1.2e-69 268.5 601 38.9
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 4.7e-69 266.5 648 35.2
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 5.7e-67 259.6 637 37.5
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 2.8e-66 257.3 669 34.8
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 1.4e-65 255.0 637 36.9
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 1.4e-65 255.0 638 36.8
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 2.0e-64 251.1 457 40.7
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 3.5e-64 250.4 624 37.3
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 1.3e-63 248.4 628 34.9
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 8.5e-63 245.7 449 40.1
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 4.2e-62 243.4 479 40.7
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 5.7e-59 233.0 665 35.8
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 4.1e-57 226.9 578 33.2
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 1.6e-53 214.9 631 33.6
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 3.4e-51 207.2 624 34.9
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 1.1e-49 202.2 327 44.3
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 7.7e-48 196.1 451 34.8
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 6.5e-47 193.0 162 63.0
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 1.5e-46 191.8 437 35.9
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 9.8e-43 179.1 742 31.0
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 9.5e-38 162.5 147 57.8
Cpa.g.sc81.1 Carica papaya HOM05D005409 ORTHO05D006456 1.1e-30 139.0 184 52.7
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 2.8e-29 134.4 264 40.5
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 3.0e-23 114.4 399 30.8
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 2.5e-22 111.3 733 26.1
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 1.4e-17 95.5 108 50.9
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 2.7e-16 91.3 116 49.1
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 2.7e-16 91.3 394 29.4
Atru.chr6.3115 Acer truncatum HOM05D005409 ORTHO05D006456 8.1e-13 79.7 190 35.8
Actinidia26960 Actinidia chinensis HOM05D005409 ORTHO05D006456 4.0e-12 77.4 86 57.0
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 4.9e-10 70.5 110 40.0
Haze_06667 Corylus avellana HOM05D005409 ORTHO05D006456 3.5e-08 64.3 179 33.5
SEGI_29006 Sequoiadendron giganteum HOM05D005409 ORTHO05D006456 2.3e-07 61.6 253 30.8


User provided reference genes

Program Settings