Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0481021 Helianthus annuus HOM05D003550 ORTHO05D004336 3.1e-50 201.4 98 100.0
Lsat_1_v5_gn_7_31581 Lactuca sativa HOM05D003550 ORTHO05D004336 3.0e-37 158.3 84 88.1
ECA236G1978 Erigeron canadensis HOM05D003550 ORTHO05D004336 3.3e-36 154.8 84 85.7
HanXRQChr04g0112901 Helianthus annuus HOM05D003550 ORTHO05D004336 7.4e-36 153.7 84 85.7
CSS0018240 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 6.5e-32 140.6 82 76.8
CSS0021926 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 6.5e-32 140.6 82 76.8
DCAR_001913 Daucus carota HOM05D003550 ORTHO05D004336 1.1e-31 139.8 84 76.2
Dinv44694 Davidia involucrata HOM05D003550 ORTHO05D004336 3.2e-31 138.3 84 77.4
Psat5g221640 Pisum sativum HOM05D003550 ORTHO05D004336 4.2e-31 137.9 84 75.0
TPR.G1404 Trifolium pratense HOM05D003550 ORTHO05D004336 4.2e-31 137.9 84 73.8
vmacro13761 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 4.2e-31 137.9 82 76.8
TAR369G1080 Trochodendron aralioides HOM05D003550 ORTHO05D004336 5.5e-31 137.5 83 75.9
Dinv32016 Davidia involucrata HOM05D003550 ORTHO05D004336 7.2e-31 137.1 84 76.2
Actinidia10150 Actinidia chinensis HOM05D003550 ORTHO05D004336 1.2e-30 136.3 82 75.6
Cfa010939 Carpinus fangiana HOM05D003550 ORTHO05D004336 2.1e-30 135.6 84 72.6
Haze_03007 Corylus avellana HOM05D003550 ORTHO05D004336 2.1e-30 135.6 84 72.6
Glyma.04G134700 Glycine max HOM05D003550 ORTHO05D004336 2.1e-30 135.6 84 73.8
MSTRG.28033 Avicennia marina HOM05D003550 ORTHO05D004336 2.7e-30 135.2 94 70.2
Nn7g36747 Nelumbo nucifera HOM05D003550 ORTHO05D004336 2.7e-30 135.2 84 72.6
Ciclev10000023m.g Citrus clementina HOM05D003550 ORTHO05D004336 3.6e-30 134.8 84 73.8
Sc10g0004490 Simmondsia chinensis HOM05D003550 ORTHO05D004336 3.6e-30 134.8 94 69.1
Ca_12963_v3 Cicer arietinum L. HOM05D003550 ORTHO05D004336 4.7e-30 134.4 84 73.8
Lj3g0007376 Lotus japonicus HOM05D003550 ORTHO05D004336 4.7e-30 134.4 84 73.8
Rhsim07G0068000 Rhododendron simsii HOM05D003550 ORTHO05D004336 4.7e-30 134.4 82 75.6
arahy.Tifrunner.gnm1.ann1.LJ5CCV Arachis hypogaea HOM05D003550 ORTHO05D004336 6.1e-30 134.0 84 72.6
arahy.Tifrunner.gnm1.ann1.VF4M4N Arachis hypogaea HOM05D003550 ORTHO05D004336 6.1e-30 134.0 84 72.6
FAN06G0346 Fragaria x ananassa HOM05D003550 ORTHO05D004336 6.1e-30 134.0 84 69.0
Glyma.11G157400 Glycine max HOM05D003550 ORTHO05D004336 7.9e-30 133.7 84 72.6
VMungo1080G0047 Vigna mungo HOM05D003550 ORTHO05D004336 7.9e-30 133.7 84 72.6
unitig_0.g2291 Utricularia gibba HOM05D003550 ORTHO05D004336 1.0e-29 133.3 94 71.3
CANSAT56G1944 Cannabis sativa HOM05D003550 ORTHO05D004336 1.4e-29 132.9 94 68.1
Atru.chr12.1267 Acer truncatum HOM05D003550 ORTHO05D004336 1.8e-29 132.5 84 72.6
Cc00_g09560 Coffea canephora HOM05D003550 ORTHO05D004336 1.8e-29 132.5 84 73.8
FvH4_7g03470 Fragaria vesca HOM05D003550 ORTHO05D004336 2.3e-29 132.1 84 67.9
FAN03G0411 Fragaria x ananassa HOM05D003550 ORTHO05D004336 3.0e-29 131.7 83 68.7
Potri.001G029600 Populus trichocarpa HOM05D003550 ORTHO05D004336 3.9e-29 131.3 84 71.4
GSVIVG01036651001 Vitis vinifera HOM05D003550 ORTHO05D004336 3.9e-29 131.3 84 69.0
Actinidia06226 Actinidia chinensis HOM05D003550 ORTHO05D004336 5.1e-29 131.0 82 72.0
Migut.N01852 Erythranthe guttata HOM05D003550 ORTHO05D004336 5.1e-29 131.0 84 73.8
RcHm_v2.0_Chr1g0325801 Rosa chinensis HOM05D003550 ORTHO05D004336 5.1e-29 131.0 84 67.9
Sabra01G0021200 Salix brachista HOM05D003550 ORTHO05D004336 5.1e-29 131.0 83 72.3
CiPaw.14G008600 Carya illinoinensis HOM05D003550 ORTHO05D004336 6.7e-29 130.6 84 70.2
MD07G1048200 Malus domestica HOM05D003550 ORTHO05D004336 6.7e-29 130.6 84 70.2
TAR623G1672 Trochodendron aralioides HOM05D003550 ORTHO05D004336 6.7e-29 130.6 84 71.4
Lj9C657G2 Lonicera japonica HOM05D003550 ORTHO05D004336 8.8e-29 130.2 74 81.1
Oeu013090.1 Olea europaea HOM05D003550 ORTHO05D004336 8.8e-29 130.2 79 74.7
Thecc.10G149700 Theobroma cacao HOM05D003550 ORTHO05D004336 8.8e-29 130.2 94 67.0
Duzib114G0877 Durio zibethinus HOM05D003550 ORTHO05D004336 1.1e-28 129.8 94 67.0
Gohir.A05G399700 Gossypium hirsutum HOM05D003550 ORTHO05D004336 2.0e-28 129.0 84 70.2
Gohir.D04G016100 Gossypium hirsutum HOM05D003550 ORTHO05D004336 2.0e-28 129.0 84 70.2
Gorai.012G018700 Gossypium raimondii HOM05D003550 ORTHO05D004336 2.0e-28 129.0 84 70.2
CDE02G1072 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 2.6e-28 128.6 84 71.4
CDE09G0620 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 2.6e-28 128.6 84 71.4
Gohir.A10G186900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 2.6e-28 128.6 94 67.0
Gorai.011G216900 Gossypium raimondii HOM05D003550 ORTHO05D004336 2.6e-28 128.6 94 67.0
PSO339G1124 Papaver somniferum HOM05D003550 ORTHO05D004336 2.6e-28 128.6 84 69.0
PSO384G0047 Papaver somniferum HOM05D003550 ORTHO05D004336 2.6e-28 128.6 84 69.0
Phvul.005G025000 Phaseolus vulgaris HOM05D003550 ORTHO05D004336 2.6e-28 128.6 84 70.2
Cfa009883 Carpinus fangiana HOM05D003550 ORTHO05D004336 3.3e-28 128.3 82 70.7
Lalb_Chr04g0264171 Lupinus albus HOM05D003550 ORTHO05D004336 3.3e-28 128.3 84 70.2
Prupe.2G040800 Prunus persica HOM05D003550 ORTHO05D004336 3.3e-28 128.3 84 69.0
Manes.04G157700 Manihot esculenta HOM05D003550 ORTHO05D004336 4.4e-28 127.9 82 70.7
Eucgr.G03219 Eucalyptus grandis HOM05D003550 ORTHO05D004336 5.7e-28 127.5 84 70.2
FAN01G2608 Fragaria x ananassa HOM05D003550 ORTHO05D004336 5.7e-28 127.5 79 69.6
Duzib106G1351 Durio zibethinus HOM05D003550 ORTHO05D004336 7.4e-28 127.1 94 64.9
Gohir.D10G193900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 7.4e-28 127.1 94 66.0
Lalb_Chr01g0015821 Lupinus albus HOM05D003550 ORTHO05D004336 9.7e-28 126.7 84 70.2
ATR0782G088 Amborella trichopoda HOM05D003550 ORTHO05D004336 1.3e-27 126.3 84 69.0
arahy.Tifrunner.gnm1.ann1.S4G3U6 Arachis hypogaea HOM05D003550 ORTHO05D004336 1.3e-27 126.3 83 68.7
CSS0027876 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 1.3e-27 126.3 84 69.0
Cpa.g.sc169.51 Carica papaya HOM05D003550 ORTHO05D004336 1.3e-27 126.3 81 71.6
PGR031G1017 Punica granatum HOM05D003550 ORTHO05D004336 1.3e-27 126.3 82 72.0
QL04p017759 Quercus lobata HOM05D003550 ORTHO05D004336 1.3e-27 126.3 82 68.3
Haze_23247 Corylus avellana HOM05D003550 ORTHO05D004336 1.7e-27 125.9 79 72.2
TWI38G1858 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 1.7e-27 125.9 84 69.0
AUR62026885 Chenopodium quinoa HOM05D003550 ORTHO05D004336 2.2e-27 125.6 79 70.9
Potri.001G274900 Populus trichocarpa HOM05D003550 ORTHO05D004336 2.2e-27 125.6 82 70.7
AUR62032634 Chenopodium quinoa HOM05D003550 ORTHO05D004336 2.8e-27 125.2 79 70.9
Peaxi162Scf00082g00122 Petunia axillaris HOM05D003550 ORTHO05D004336 2.8e-27 125.2 82 70.7
Hund13381 Selenicereus undatus HOM05D003550 ORTHO05D004336 2.8e-27 125.2 82 68.3
Aqoxy1G00373 Aquilegia oxysepala HOM05D003550 ORTHO05D004336 3.7e-27 124.8 84 67.9
Nitab4.5_0005808g0030 Nicotiana tabacum HOM05D003550 ORTHO05D004336 3.7e-27 124.8 82 72.0
Solyc01g096490.3 Solanum lycopersicum HOM05D003550 ORTHO05D004336 3.7e-27 124.8 84 70.2
Sopen01g040220 Solanum pennellii HOM05D003550 ORTHO05D004336 3.7e-27 124.8 84 70.2
HPP92_001023 Vanilla planifolia HOM05D003550 ORTHO05D004336 3.7e-27 124.8 84 67.9
MSTRG.5071 Avicennia marina HOM05D003550 ORTHO05D004336 4.8e-27 124.4 84 70.2
MELO3C012481.2 Cucumis melo HOM05D003550 ORTHO05D004336 4.8e-27 124.4 84 65.5
CsaV3_5G036850 Cucumis sativus L. HOM05D003550 ORTHO05D004336 4.8e-27 124.4 84 65.5
THA.LOC104819140 Tarenaya hassleriana HOM05D003550 ORTHO05D004336 4.8e-27 124.4 84 65.5
CAN.G1045.18 Capsicum annuum HOM05D003550 ORTHO05D004336 6.3e-27 124.0 83 72.3
FAN10G1007 Fragaria x ananassa HOM05D003550 ORTHO05D004336 6.3e-27 124.0 79 68.4
TWI15G0170 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 6.3e-27 124.0 84 67.9
Ah.10g030140 Amaranthus hybridus HOM05D003550 ORTHO05D004336 1.4e-26 122.9 82 69.5
CiPaw.14G112000 Carya illinoinensis HOM05D003550 ORTHO05D004336 1.4e-26 122.9 82 69.5
Sed0009251 Sechium edule HOM05D003550 ORTHO05D004336 1.4e-26 122.9 84 64.3
Nitab4.5_0003481g0090 Nicotiana tabacum HOM05D003550 ORTHO05D004336 1.8e-26 122.5 81 71.6
C03p07080 Brassica napus HOM05D003550 ORTHO05D004336 2.4e-26 122.1 83 62.7
BolC3t13205H Brassica oleracea HOM05D003550 ORTHO05D004336 2.4e-26 122.1 83 62.7
Thhalv10012422m.g Eutrema salsugineum HOM05D003550 ORTHO05D004336 2.4e-26 122.1 84 63.1
MD02G1282100 Malus domestica HOM05D003550 ORTHO05D004336 2.4e-26 122.1 84 66.7
Atru.chr12.1265 Acer truncatum HOM05D003550 ORTHO05D004336 3.1e-26 121.7 84 70.2
HPP92_003596 Vanilla planifolia HOM05D003550 ORTHO05D004336 4.1e-26 121.3 82 67.1
CARHR199910 Cardamine hirsuta HOM05D003550 ORTHO05D004336 7.0e-26 120.6 84 61.9
vmacro04042 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 7.0e-26 120.6 82 67.1
AL6G24150 Arabidopsis lyrata HOM05D003550 ORTHO05D004336 9.1e-26 120.2 84 60.7
AT5G13530 Arabidopsis thaliana HOM05D003550 ORTHO05D004336 9.1e-26 120.2 84 60.7
BcaB01g05352 Brassica carinata HOM05D003550 ORTHO05D004336 9.1e-26 120.2 84 60.7
A03p06030 Brassica napus HOM05D003550 ORTHO05D004336 9.1e-26 120.2 84 60.7
Medtr3g014090 Medicago truncatula HOM05D003550 ORTHO05D004336 9.1e-26 120.2 86 67.4
Sp6g30490 Schrenkiella parvula HOM05D003550 ORTHO05D004336 9.1e-26 120.2 84 60.7
Carub.0006s1169 Capsella rubella HOM05D003550 ORTHO05D004336 1.2e-25 119.8 84 60.7
EL10Ac2g02773 Beta vulgaris HOM05D003550 ORTHO05D004336 1.5e-25 119.4 77 68.8
QL01p016949 Quercus lobata HOM05D003550 ORTHO05D004336 1.5e-25 119.4 81 67.9
SEGI_17265 Sequoiadendron giganteum HOM05D003550 ORTHO05D004336 2.0e-25 119.0 84 63.1
AagrBONN_evm.TU.Sc2ySwM_344.1602 Anthoceros agrestis HOM05D003550 ORTHO05D004336 2.6e-25 118.6 84 64.3
Sabra16G0169200 Salix brachista HOM05D003550 ORTHO05D004336 2.6e-25 118.6 82 67.1
Mapoly0002s0111 Marchantia polymorpha HOM05D003550 ORTHO05D004336 4.5e-25 117.9 82 64.6
Actinidia24461 Actinidia chinensis HOM05D003550 ORTHO05D004336 5.9e-25 117.5 80 67.5
Rhsim13G0208400 Rhododendron simsii HOM05D003550 ORTHO05D004336 5.9e-25 117.5 79 68.4
Zm00001eb287260 Zea mays HOM05D003550 ORTHO05D004336 5.9e-25 117.5 82 64.6
Zm00001eb350870 Zea mays HOM05D003550 ORTHO05D004336 7.7e-25 117.1 82 64.6
Glyma.13G195200 Glycine max HOM05D003550 ORTHO05D004336 1.7e-24 115.9 94 61.7
Sed0016122 Sechium edule HOM05D003550 ORTHO05D004336 1.7e-24 115.9 84 64.3
BraA03t09941Z Brassica rapa HOM05D003550 ORTHO05D004336 2.2e-24 115.5 79 62.0
MELO3C014558.2 Cucumis melo HOM05D003550 ORTHO05D004336 6.5e-24 114.0 84 63.1
CsaV3_6G038940 Cucumis sativus L. HOM05D003550 ORTHO05D004336 6.5e-24 114.0 84 63.1
arahy.Tifrunner.gnm1.ann1.2K1FXD Arachis hypogaea HOM05D003550 ORTHO05D004336 8.5e-24 113.6 83 65.1
Actinidia06972 Actinidia chinensis HOM05D003550 ORTHO05D004336 3.2e-23 111.7 80 63.8
SGA_v2.0_scaffold232G43498 Striga asiatica HOM05D003550 ORTHO05D004336 3.2e-23 111.7 91 59.3
Glyma.15G233001 Glycine max HOM05D003550 ORTHO05D004336 5.5e-23 110.9 92 58.7
Aa31LG11G7760 Aethionema arabicum HOM05D003550 ORTHO05D004336 7.2e-23 110.5 77 62.3
SHI04011 Sapria himalayana HOM05D003550 ORTHO05D004336 1.5e-20 102.8 84 57.1
Glyma.15G233567 Glycine max HOM05D003550 ORTHO05D004336 1.1e-15 86.7 64 59.4
BolC2t06569H Brassica oleracea HOM05D003550 ORTHO05D004336 1.5e-15 86.3 73 53.4
CBR_g16035 Chara braunii HOM05D003550 ORTHO05D004336 9.4e-15 83.6 83 48.2
arahy.Tifrunner.gnm1.ann1.8B1C3X Arachis hypogaea HOM05D003550 ORTHO05D004336 1.3e-11 73.2 46 67.4
AUR62044058 Chenopodium quinoa HOM05D003550 ORTHO05D004336 2.8e-11 72.0 44 70.5
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 1.2e-09 66.6 56 58.9
arahy.Tifrunner.gnm1.ann1.SS96TB Arachis hypogaea HOM05D003550 ORTHO05D004336 4.2e-07 58.2 35 74.3
BcaB01g02474 Brassica carinata HOM05D003550 ORTHO05D004336 4.7e-06 54.7 54 44.4


User provided reference genes

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