Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 8.7e-104 380.2 175 100.0
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 9.7e-87 323.6 151 97.4
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 9.7e-87 323.6 151 97.4
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 9.7e-87 323.6 151 97.4
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 9.7e-87 323.6 151 97.4
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 9.7e-87 323.6 151 97.4
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 9.7e-87 323.6 151 97.4
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 9.7e-87 323.6 151 97.4
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 9.7e-87 323.6 151 97.4
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 9.7e-87 323.6 151 97.4
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 9.7e-87 323.6 151 97.4
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 8.2e-86 320.5 151 96.7
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-85 320.1 151 96.7
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 1.8e-85 319.3 151 95.4
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 1.8e-85 319.3 151 95.4
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 1.8e-85 319.3 151 95.4
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 4.5e-84 314.7 151 94.0
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 1.3e-83 313.2 151 93.4
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.3e-83 313.2 151 93.4
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 1.7e-83 312.8 151 92.7
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 2.2e-83 312.4 151 93.4
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.9e-83 312.0 151 93.4
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 3.8e-83 311.6 151 92.7
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.5e-83 310.8 151 92.7
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.5e-83 310.8 151 92.7
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 8.5e-83 310.5 151 92.1
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 1.1e-82 310.1 150 92.0
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 1.4e-82 309.7 151 92.7
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 1.4e-82 309.7 152 92.1
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 2.5e-82 308.9 151 93.4
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 5.5e-82 307.8 151 90.7
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 5.5e-82 307.8 151 90.7
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 7.2e-82 307.4 151 92.7
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 9.4e-82 307.0 151 91.4
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 9.4e-82 307.0 151 91.4
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 2.7e-81 305.4 151 91.4
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 7.9e-81 303.9 151 91.4
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 7.9e-81 303.9 151 91.4
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 1.4e-80 303.1 151 91.4
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 1.4e-80 303.1 154 87.0
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 2.3e-80 302.4 172 79.7
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 6.7e-80 300.8 151 90.1
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 6.7e-80 300.8 178 79.2
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 6.7e-80 300.8 178 79.2
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 6.7e-80 300.8 178 79.2
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 6.7e-80 300.8 178 79.2
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 6.7e-80 300.8 151 90.1
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 6.7e-80 300.8 151 90.1
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 6.7e-80 300.8 151 90.1
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 6.7e-80 300.8 151 90.1
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 6.7e-80 300.8 151 90.1
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 6.7e-80 300.8 151 90.1
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 6.7e-80 300.8 151 90.1
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 1.1e-79 300.1 151 90.1
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 2.5e-79 298.9 151 89.4
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 3.3e-79 298.5 151 87.4
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 7.4e-79 297.4 151 88.7
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 7.4e-79 297.4 151 89.4
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 9.7e-79 297.0 172 79.1
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 1.7e-78 296.2 151 88.7
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 1.7e-78 296.2 151 86.8
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 2.2e-78 295.8 151 88.7
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 2.2e-78 295.8 150 88.0
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 2.2e-78 295.8 151 87.4
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 6.3e-78 294.3 151 89.4
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 6.3e-78 294.3 144 91.0
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 6.3e-78 294.3 144 91.0
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 6.3e-78 294.3 144 91.0
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 8.2e-78 293.9 152 88.2
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 4.1e-77 291.6 178 77.0
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 1.5e-76 289.7 146 89.7
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 3.4e-76 288.5 151 88.7
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 6.5e-75 284.3 139 91.4
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.0e-72 275.4 139 89.2
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 2.0e-71 272.7 134 91.8
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 7.4e-71 270.8 135 91.1
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 7.4e-71 270.8 136 88.2
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 3.7e-70 268.5 151 81.5
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 7.0e-69 264.2 151 81.5
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 7.0e-69 264.2 151 80.8
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 7.0e-69 264.2 134 89.6
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 2.0e-68 262.7 144 84.0
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.9e-68 261.2 151 82.1
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 8.5e-67 257.3 141 83.7
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 8.5e-67 257.3 134 87.3
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 2.3e-64 249.2 149 79.2
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 5.7e-63 244.6 151 76.2
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 1.6e-60 236.5 155 72.9
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.7e-59 233.0 139 76.3
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.5e-58 229.9 143 76.9
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 9.4e-58 227.3 135 77.8
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 6.1e-57 224.6 151 72.8
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 5.7e-55 218.0 134 78.4
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.7e-54 216.5 124 79.8
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 2.2e-54 216.1 109 90.8
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 6.3e-54 214.5 100 94.0
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 6.3e-54 214.5 100 94.0
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 6.3e-54 214.5 100 94.0
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 1.8e-53 213.0 109 88.1
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 1.6e-52 209.9 107 86.9
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 1.6e-52 209.9 107 86.9
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 2.7e-52 209.1 109 89.9
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 3.5e-52 208.8 128 78.1
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 1.3e-51 206.8 153 68.0
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.3e-51 206.8 101 90.1
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 7.2e-50 201.1 100 90.0
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 9.4e-50 200.7 144 66.7
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 9.4e-50 200.7 144 66.7
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 9.4e-50 200.7 144 66.7
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.6e-49 198.7 106 85.8
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 5.7e-47 191.4 95 91.6
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 7.5e-47 191.0 100 85.0
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.3e-46 190.3 111 77.5
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.2e-46 189.5 109 82.6
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 5.4e-45 184.9 115 74.8
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.5e-44 182.2 109 78.0
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 1.0e-43 180.6 154 64.3
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 1.9e-42 176.4 97 85.6
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.5e-42 176.0 89 91.0
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 4.2e-42 175.3 87 90.8
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 7.2e-42 174.5 90 84.4
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 7.2e-42 174.5 100 82.0
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 3.4e-39 165.6 100 78.0
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.9e-38 162.5 142 66.2
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 3.2e-37 159.1 82 89.0
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 4.1e-37 158.7 81 90.1
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 4.1e-37 158.7 84 89.3
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 8.6e-35 151.0 78 84.6
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 8.6e-35 151.0 75 94.7
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 1.1e-34 150.6 75 92.0
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 1.9e-34 149.8 76 90.8
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 2.5e-34 149.4 75 93.3
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 9.5e-34 147.5 78 87.2
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 4.7e-33 145.2 75 88.0
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 6.2e-33 144.8 75 88.0
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 8.0e-33 144.4 78 84.6
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 3.7e-30 135.6 84 76.2
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 4.1e-29 132.1 124 57.3
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.7e-27 126.7 91 69.2
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.7e-27 126.7 76 78.9
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 3.9e-27 125.6 64 90.6
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.5e-26 123.6 75 77.3
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 5.6e-26 121.7 57 98.2
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 3.6e-25 119.0 60 93.3
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.4e-24 117.1 69 75.4
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 4.0e-24 115.5 58 86.2
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 1.5e-23 113.6 55 90.9
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 4.9e-22 108.6 54 88.9
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 1.1e-21 107.5 50 96.0
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 1.9e-21 106.7 51 96.1
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.2e-20 104.0 51 90.2
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.7e-19 100.1 49 91.8
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 1.7e-19 100.1 58 79.3
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 3.9e-19 99.0 53 79.2
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 1.2e-17 94.0 43 93.0
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 3.6e-17 92.4 86 50.0
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 2.3e-16 89.7 45 88.9
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 6.8e-16 88.2 41 92.7
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 2.4e-13 79.7 39 89.7
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 3.3e-10 69.3 46 69.6
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 4.3e-10 68.9 42 81.0
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 4.4e-07 58.9 88 30.7
Nitab4.5_0007578g0070 Nicotiana tabacum HOM05D012508 ORTHO05D011743 4.4e-07 58.9 59 52.5
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 1.3e-06 57.4 88 29.5
Hund10567 Selenicereus undatus HOM05D001033 ORTHO05D004888 1.3e-06 57.4 38 60.5
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 4.9e-06 55.5 24 95.8
FvH4_3g38401 Fragaria vesca HOM05D001033 ORTHO05D004888 8.4e-06 54.7 27 88.9


User provided reference genes

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