Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 1.5e-68 262.7 130 100.0
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 1.3e-64 249.6 130 95.4
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 6.4e-43 177.6 141 66.0
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 4.4e-36 154.8 130 60.0
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 1.3e-35 153.3 146 58.9
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 8.3e-35 150.6 127 59.1
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.4e-34 149.8 137 54.0
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.4e-34 149.8 137 54.0
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.4e-34 149.8 137 54.0
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.9e-34 149.4 130 56.9
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.4e-34 149.1 127 57.5
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 3.2e-34 148.7 128 58.6
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 3.2e-34 148.7 131 55.7
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 4.1e-34 148.3 131 55.0
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 1.2e-33 146.7 128 57.8
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 3.5e-33 145.2 135 55.6
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 6.0e-33 144.4 112 62.5
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 1.3e-32 143.3 134 59.7
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.7e-32 142.9 144 56.9
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 1.7e-32 142.9 121 61.2
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 3.0e-32 142.1 127 55.9
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 3.9e-32 141.7 135 54.8
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 5.1e-32 141.4 135 57.0
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 8.6e-32 140.6 129 55.8
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 1.1e-31 140.2 136 53.7
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.5e-31 139.8 116 56.9
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 7.3e-31 137.5 141 52.5
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 7.3e-31 137.5 141 52.5
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 9.5e-31 137.1 126 57.1
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.1e-30 136.0 127 53.5
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 3.6e-30 135.2 141 53.2
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 4.7e-30 134.8 123 56.1
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 4.7e-30 134.8 130 54.6
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 6.2e-30 134.4 131 50.4
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 8.1e-30 134.0 112 58.0
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 8.1e-30 134.0 113 57.5
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 1.1e-29 133.7 138 50.0
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 1.1e-29 133.7 123 55.3
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 1.4e-29 133.3 127 51.2
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 1.4e-29 133.3 123 56.1
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 1.4e-29 133.3 129 55.0
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 3.1e-29 132.1 138 52.9
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 3.1e-29 132.1 128 51.6
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.5e-28 129.8 134 53.0
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 4.4e-28 128.3 142 52.1
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 4.4e-28 128.3 115 54.8
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 5.8e-28 127.9 123 52.8
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 5.8e-28 127.9 144 52.1
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 9.9e-28 127.1 130 52.3
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.7e-27 126.3 133 52.6
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 2.9e-27 125.6 127 51.2
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.1e-26 123.6 117 51.3
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 1.4e-26 123.2 128 57.0
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.9e-26 122.9 127 48.0
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 2.4e-26 122.5 131 48.1
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 2.4e-26 122.5 117 51.3
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 2.4e-26 122.5 117 51.3
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 7.1e-26 120.9 106 55.7
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 7.1e-26 120.9 92 62.0
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.2e-25 120.2 118 54.2
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 1.6e-25 119.8 112 55.4
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.6e-25 119.8 131 50.4
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 2.7e-25 119.0 139 51.8
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 2.7e-25 119.0 123 51.2
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 4.6e-25 118.2 117 50.4
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 7.8e-25 117.5 124 50.8
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 1.0e-24 117.1 79 65.8
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 1.3e-24 116.7 151 44.4
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 1.7e-24 116.3 151 44.4
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 2.3e-24 115.9 120 50.0
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.3e-24 115.9 154 45.5
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 3.0e-24 115.5 139 47.5
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 3.3e-23 112.1 138 50.0
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 3.3e-23 112.1 129 47.3
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 7.3e-23 110.9 114 47.4
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 7.3e-23 110.9 129 46.5
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 9.5e-23 110.5 120 51.7
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 1.6e-22 109.8 134 46.3
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.8e-22 109.0 113 48.7
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 4.7e-22 108.2 124 48.4
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 6.2e-22 107.8 74 63.5
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 6.2e-22 107.8 134 49.3
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 6.2e-22 107.8 135 45.9
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.1e-21 107.1 102 51.0
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.1e-21 107.1 129 48.1
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 1.4e-21 106.7 139 45.3
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 1.8e-21 106.3 113 46.9
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 1.8e-21 106.3 129 46.5
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 3.1e-21 105.5 117 47.0
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 5.2e-21 104.8 126 44.4
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 8.9e-21 104.0 128 48.4
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.5e-20 103.2 130 44.6
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 2.0e-20 102.8 130 44.6
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 2.6e-20 102.4 125 47.2
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.6e-20 102.4 113 44.2
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 2.6e-20 102.4 134 44.0
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 4.4e-20 101.7 129 45.7
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 5.8e-20 101.3 139 44.6
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 9.9e-20 100.5 125 46.4
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 9.9e-20 100.5 79 50.6
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 1.3e-19 100.1 125 45.6
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 1.7e-19 99.8 125 43.2
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 2.2e-19 99.4 116 47.4
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 6.4e-19 97.8 127 44.1
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 6.4e-19 97.8 127 44.1
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 8.4e-19 97.4 96 52.1
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.4e-18 95.9 131 43.5
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 4.2e-18 95.1 75 58.7
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 5.4e-18 94.7 130 44.6
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 1.2e-17 93.6 99 48.5
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 1.0e-16 90.5 113 44.2
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 6.6e-16 87.8 56 67.9
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 4.3e-15 85.1 107 42.1
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 5.6e-15 84.7 132 40.2
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 9.6e-15 84.0 114 43.0
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 9.6e-15 84.0 90 48.9
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.6e-14 83.2 94 45.7
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 7.6e-12 74.3 122 38.5
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 3.8e-11 72.0 127 36.2
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 4.9e-11 71.6 107 40.2
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 8.4e-11 70.9 120 38.3
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 8.4e-11 70.9 103 36.9
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 1.9e-10 69.7 112 40.2
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 3.2e-10 68.9 109 43.1
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 9.3e-10 67.4 52 53.8
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 2.1e-09 66.2 121 37.2
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 1.3e-08 63.5 44 61.4
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.3e-08 63.5 127 34.6
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 2.3e-08 62.8 115 35.7
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 5.1e-08 61.6 44 61.4
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 6.6e-08 61.2 115 34.8
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 6.6e-08 61.2 115 34.8
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 6.6e-08 61.2 115 34.8
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 8.7e-08 60.8 114 36.8
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 8.7e-08 60.8 113 31.9
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.6e-06 56.6 121 33.9
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 4.8e-06 55.1 112 33.0


User provided reference genes

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