Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 2.9e-85 318.5 165 100.0
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 4.9e-56 221.5 119 95.8
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.7e-54 215.7 122 91.0
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 5.2e-50 201.4 108 96.3
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 4.7e-43 178.3 108 84.3
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.4e-42 176.8 123 74.8
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 8.9e-42 174.1 124 75.0
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 3.9e-37 158.7 119 69.7
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 8.4e-32 141.0 133 54.9
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 6.0e-30 134.8 127 55.1
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.0e-29 134.0 119 58.8
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.3e-29 132.9 121 57.0
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.5e-28 130.2 117 56.4
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 3.3e-28 129.0 128 53.1
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 5.6e-28 128.3 126 52.4
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.3e-27 127.1 121 52.9
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 6.2e-27 124.8 121 53.7
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.4e-26 123.6 127 50.4
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 9.0e-26 120.9 133 48.1
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 1.2e-25 120.6 127 50.4
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.5e-25 120.2 127 50.4
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 3.4e-25 119.0 127 47.2
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 3.4e-25 119.0 127 48.8
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 3.4e-25 119.0 127 50.4
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 3.4e-25 119.0 133 46.6
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 3.4e-25 119.0 121 52.1
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 4.5e-25 118.6 127 48.0
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 5.8e-25 118.2 127 49.6
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 7.6e-25 117.9 134 47.0
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 7.6e-25 117.9 128 49.2
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 7.6e-25 117.9 121 52.9
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 7.6e-25 117.9 125 49.6
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 9.9e-25 117.5 127 46.5
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 9.9e-25 117.5 129 49.6
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 9.9e-25 117.5 129 49.6
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.3e-24 117.1 127 46.5
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.7e-24 116.7 127 52.0
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 2.9e-24 115.9 126 48.4
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 2.9e-24 115.9 127 48.8
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 2.9e-24 115.9 118 52.5
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 8.4e-24 114.4 121 52.1
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.4e-23 113.6 127 49.6
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.4e-23 113.6 118 51.7
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.9e-23 113.2 119 51.3
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.9e-23 113.2 127 44.9
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 3.2e-23 112.5 133 46.6
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 4.2e-23 112.1 135 45.9
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 9.3e-23 110.9 120 50.8
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 9.3e-23 110.9 133 47.4
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.2e-22 110.5 127 48.0
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 3.5e-22 109.0 121 47.1
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 3.5e-22 109.0 133 47.4
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 6.0e-22 108.2 127 48.8
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.0e-21 107.5 121 49.6
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 2.3e-21 106.3 127 47.2
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 2.3e-21 106.3 137 40.1
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 3.0e-21 105.9 121 48.8
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 5.1e-21 105.1 127 45.7
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 8.7e-21 104.4 128 42.2
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 1.1e-20 104.0 124 47.6
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.5e-20 103.6 124 42.7
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 1.5e-20 103.6 119 47.9
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.9e-20 103.2 128 44.5
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.9e-20 103.2 128 47.7
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 2.5e-20 102.8 119 47.1
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 2.5e-20 102.8 110 50.0
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.3e-20 102.4 119 47.1
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.3e-20 102.1 135 42.2
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.3e-20 102.1 133 41.4
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 4.3e-20 102.1 118 46.6
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 5.6e-20 101.7 97 49.5
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 5.6e-20 101.7 127 45.7
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 7.4e-20 101.3 121 46.3
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.1e-19 99.8 112 48.2
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 2.1e-19 99.8 84 54.8
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.8e-19 99.4 101 47.5
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 3.6e-19 99.0 128 43.8
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 4.8e-19 98.6 133 42.9
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 6.2e-19 98.2 133 42.9
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 6.2e-19 98.2 133 42.9
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 2.4e-18 96.3 127 42.5
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 4.0e-18 95.5 118 43.2
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 5.3e-18 95.1 127 43.3
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 6.9e-18 94.7 127 44.9
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 6.9e-18 94.7 118 42.4
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.2e-17 94.0 100 44.0
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.5e-17 93.6 128 43.8
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.5e-17 93.6 128 43.8
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.5e-17 93.6 128 43.8
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 2.0e-17 93.2 127 41.7
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 2.6e-17 92.8 146 37.0
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 2.6e-17 92.8 109 42.2
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 2.6e-17 92.8 100 43.0
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 2.6e-17 92.8 149 40.9
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 2.6e-17 92.8 97 44.3
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 2.6e-17 92.8 97 43.3
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 3.4e-17 92.4 109 42.2
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 3.4e-17 92.4 128 43.0
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 5.8e-17 91.7 109 45.0
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 5.8e-17 91.7 133 41.4
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.3e-16 90.5 72 66.7
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 1.3e-16 90.5 71 67.6
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 1.3e-16 90.5 134 41.8
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.2e-16 89.7 115 43.5
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.9e-16 89.4 130 38.5
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 2.9e-16 89.4 109 41.3
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 3.8e-16 89.0 130 40.0
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 3.8e-16 89.0 121 43.8
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 6.4e-16 88.2 130 39.2
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 8.4e-16 87.8 121 43.0
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 8.4e-16 87.8 128 43.0
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.9e-15 86.7 124 40.3
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 2.4e-15 86.3 119 41.2
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 3.2e-15 85.9 130 39.2
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.2e-15 85.5 121 43.0
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 4.2e-15 85.5 94 44.7
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 5.5e-15 85.1 121 39.7
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 7.1e-15 84.7 121 42.1
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.1e-14 83.2 121 41.3
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 2.3e-13 79.7 97 44.3
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.0e-13 79.3 133 35.3
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 5.1e-13 78.6 133 36.8
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-12 77.4 122 38.5
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-12 77.4 122 38.5
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.9e-12 76.6 122 38.5
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 1.9e-12 76.6 133 36.8
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.5e-12 76.3 121 38.8
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 4.3e-12 75.5 68 57.4
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.8e-11 72.8 101 39.6
ECA234G0451 Erigeron canadensis HOM05D003640 ORTHO05D004439 3.7e-11 72.4 59 66.1
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 3.7e-11 72.4 49 69.4
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 3.1e-10 69.3 109 35.8
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 4.0e-10 68.9 60 58.3
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 3.8e-08 62.4 115 35.7
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 8.4e-08 61.2 115 34.8
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 8.4e-08 61.2 115 34.8
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.1e-07 60.8 68 45.6
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.9e-07 60.1 121 35.5
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 3.2e-07 59.3 98 34.7
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 9.3e-07 57.8 98 35.7
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 6.0e-06 55.1 121 33.1


User provided reference genes

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