Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0478791 Helianthus annuus HOM05D000029 ORTHO05D008675 2.5e-54 215.7 153 100.0
HanXRQChr13g0420401 Helianthus annuus HOM05D000029 ORTHO05D008675 1.9e-38 162.9 83 94.0
ECA240G4437 Erigeron canadensis HOM05D000029 ORTHO05D008675 4.4e-27 125.2 84 70.2
HanXRQChr03g0064511 Helianthus annuus HOM05D000029 ORTHO05D008675 8.6e-23 110.9 105 96.2
CiPaw.15G179100 Carya illinoinensis HOM05D000029 ORTHO05D008675 9.5e-22 107.5 82 53.7
Glyma.09G097500 Glycine max HOM05D000029 ORTHO05D008675 1.1e-20 104.0 82 58.5
Phvul.009G208500 Phaseolus vulgaris HOM05D000029 ORTHO05D008675 2.3e-20 102.8 82 61.0
Ca_25010_v3 Cicer arietinum L. HOM05D000029 ORTHO05D008675 1.2e-19 100.5 81 58.0
Aqoxy7G03509 Aquilegia oxysepala HOM05D000029 ORTHO05D008675 9.8e-19 97.4 79 53.2
EL10Ac7g16155 Beta vulgaris HOM05D000029 ORTHO05D008675 1.7e-18 96.7 70 61.4
AUR62011270 Chenopodium quinoa HOM05D000029 ORTHO05D008675 2.9e-18 95.9 67 64.2
Sc14g0000050 Simmondsia chinensis HOM05D000029 ORTHO05D008675 3.7e-18 95.5 68 64.7
Lsat_1_v5_gn_7_48300 Lactuca sativa HOM05D000029 ORTHO05D008675 4.9e-18 95.1 61 72.1
Hma1.2p1_0182F.1_g080640 Hydrangea macrophylla HOM05D000029 ORTHO05D008675 1.6e-16 90.1 60 63.3
TAR636G1414 Trochodendron aralioides HOM05D000029 ORTHO05D008675 1.6e-16 90.1 67 59.7
PSO210G6437 Papaver somniferum HOM05D000029 ORTHO05D008675 7.8e-16 87.8 87 51.7
Lj9C710G7 Lonicera japonica HOM05D000029 ORTHO05D008675 1.0e-15 87.4 66 59.1
Nn2g12265 Nelumbo nucifera HOM05D000029 ORTHO05D008675 1.0e-15 87.4 67 58.2
SGA_v2.0_scaffold183G39854 Striga asiatica HOM05D000029 ORTHO05D008675 1.7e-15 86.7 71 59.2
Gohir.A05G049700 Gossypium hirsutum HOM05D000029 ORTHO05D008675 6.6e-15 84.7 59 57.6
Nn8g39752 Nelumbo nucifera HOM05D000029 ORTHO05D008675 1.1e-14 84.0 59 62.7
CARHR104130 Cardamine hirsuta HOM05D000029 ORTHO05D008675 1.9e-14 83.2 68 54.4
Dinv42902 Davidia involucrata HOM05D000029 ORTHO05D008675 4.3e-14 82.0 57 61.4
Dinv43199 Davidia involucrata HOM05D000029 ORTHO05D008675 4.3e-14 82.0 57 61.4
Cpa.g.sc46.97 Carica papaya HOM05D000029 ORTHO05D008675 5.6e-14 81.6 57 64.9
Actinidia04258 Actinidia chinensis HOM05D000029 ORTHO05D008675 7.3e-14 81.3 57 63.2
TAR625G0961 Trochodendron aralioides HOM05D000029 ORTHO05D008675 9.5e-14 80.9 58 62.1
Gorai.010G110800 Gossypium raimondii HOM05D000029 ORTHO05D008675 1.2e-13 80.5 59 62.7
Cc06_g07330 Coffea canephora HOM05D000029 ORTHO05D008675 2.1e-13 79.7 54 61.1
Medtr2g449790 Medicago truncatula HOM05D000029 ORTHO05D008675 2.1e-13 79.7 60 58.3
RcHm_v2.0_Chr2g0086441 Rosa chinensis HOM05D000029 ORTHO05D008675 2.1e-13 79.7 57 61.4
Eucgr.C00408 Eucalyptus grandis HOM05D000029 ORTHO05D008675 2.8e-13 79.3 57 63.2
Ciclev10007366m.g Citrus clementina HOM05D000029 ORTHO05D008675 3.6e-13 79.0 57 59.6
PGR142G0310 Punica granatum HOM05D000029 ORTHO05D008675 3.6e-13 79.0 67 52.2
Psat1g021400 Pisum sativum HOM05D000029 ORTHO05D008675 4.7e-13 78.6 65 56.9
QL02p091613 Quercus lobata HOM05D000029 ORTHO05D008675 4.7e-13 78.6 57 59.6
QL02p091668 Quercus lobata HOM05D000029 ORTHO05D008675 4.7e-13 78.6 57 59.6
Sabra06G0144500 Salix brachista HOM05D000029 ORTHO05D008675 4.7e-13 78.6 59 57.6
ATR0629G132 Amborella trichopoda HOM05D000029 ORTHO05D008675 6.2e-13 78.2 63 58.7
AUR62042025 Chenopodium quinoa HOM05D000029 ORTHO05D008675 6.2e-13 78.2 57 61.4
COL.COLO4_18730 Corchorus olitorius HOM05D000029 ORTHO05D008675 6.2e-13 78.2 59 54.2
Sabra18G0096100 Salix brachista HOM05D000029 ORTHO05D008675 6.2e-13 78.2 57 59.6
arahy.Tifrunner.gnm1.ann1.E0PJ22 Arachis hypogaea HOM05D000029 ORTHO05D008675 8.1e-13 77.8 55 60.0
arahy.Tifrunner.gnm1.ann1.J2TUGE Arachis hypogaea HOM05D000029 ORTHO05D008675 8.1e-13 77.8 55 60.0
MSTRG.26310 Avicennia marina HOM05D000029 ORTHO05D008675 8.1e-13 77.8 59 55.9
Cfa020871 Carpinus fangiana HOM05D000029 ORTHO05D008675 1.1e-12 77.4 55 60.0
Duzib168G1584 Durio zibethinus HOM05D000029 ORTHO05D008675 1.1e-12 77.4 55 60.0
Hund21613 Selenicereus undatus HOM05D000029 ORTHO05D008675 1.1e-12 77.4 55 67.3
TWI63G0625 Tripterygium wilfordii HOM05D000029 ORTHO05D008675 1.1e-12 77.4 54 59.3
Gohir.D06G096100 Gossypium hirsutum HOM05D000029 ORTHO05D008675 1.8e-12 76.6 57 61.4
Atru.chr7.195 Acer truncatum HOM05D000029 ORTHO05D008675 3.1e-12 75.9 55 60.0
Thecc.09G037100 Theobroma cacao HOM05D000029 ORTHO05D008675 3.1e-12 75.9 55 58.2
Aa31sc462G20 Aethionema arabicum HOM05D000029 ORTHO05D008675 4.0e-12 75.5 67 47.8
FvH4_1g01520 Fragaria vesca HOM05D000029 ORTHO05D008675 4.0e-12 75.5 57 59.6
FAN23G2015 Fragaria x ananassa HOM05D000015 ORTHO05D008675 4.0e-12 75.5 57 59.6
FAN28G2859 Fragaria x ananassa HOM05D000029 ORTHO05D008675 4.0e-12 75.5 57 59.6
ClCG11G003620 Citrullus lanatus HOM05D000361 ORTHO05D008498 5.2e-12 75.1 55 56.4
Haze_19300 Corylus avellana HOM05D000029 ORTHO05D008675 5.2e-12 75.1 54 59.3
Potri.006G189000 Populus trichocarpa HOM05D000029 ORTHO05D008675 5.2e-12 75.1 55 58.2
THA.LOC104808930 Tarenaya hassleriana HOM05D000029 ORTHO05D008675 6.8e-12 74.7 59 54.2
DCAR_019354 Daucus carota HOM05D000029 ORTHO05D008675 8.9e-12 74.3 53 62.3
FAN26G0282 Fragaria x ananassa HOM05D000029 ORTHO05D008675 8.9e-12 74.3 57 57.9
Gohir.D05G051500 Gossypium hirsutum HOM05D000029 ORTHO05D008675 1.5e-11 73.6 54 53.7
MD02G1012000 Malus domestica HOM05D000029 ORTHO05D008675 1.5e-11 73.6 59 52.5
Potri.018G113000 Populus trichocarpa HOM05D000029 ORTHO05D008675 1.5e-11 73.6 55 58.2
Ah.14g078590 Amaranthus hybridus HOM05D000029 ORTHO05D008675 2.0e-11 73.2 55 61.8
CANSAT11G0207 Cannabis sativa HOM05D000029 ORTHO05D008675 2.0e-11 73.2 56 57.1
Gorai.009G053200 Gossypium raimondii HOM05D000029 ORTHO05D008675 2.0e-11 73.2 54 53.7
Prupe.7G253000 Prunus persica HOM05D000029 ORTHO05D008675 2.0e-11 73.2 59 52.5
VMungo1309G2617 Vigna mungo HOM05D000029 ORTHO05D008675 2.6e-11 72.8 57 59.6
MBI15_g29771_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D008675 3.4e-11 72.4 54 59.3
Duzib187G1722 Durio zibethinus HOM05D000029 ORTHO05D008675 4.4e-11 72.0 55 54.5
Thhalv10005775m.g Eutrema salsugineum HOM05D000029 ORTHO05D008675 4.4e-11 72.0 59 52.5
Manes.06G040500 Manihot esculenta HOM05D000029 ORTHO05D008675 4.4e-11 72.0 54 57.4
BcaB01g00027 Brassica carinata HOM05D000029 ORTHO05D008675 5.8e-11 71.6 60 55.0
Lj6g0013100 Lotus japonicus HOM05D000029 ORTHO05D008675 5.8e-11 71.6 57 57.9
BcaC07g39929 Brassica carinata HOM05D000029 ORTHO05D008675 7.6e-11 71.2 58 56.9
BolC8t50764H Brassica oleracea HOM05D000029 ORTHO05D008675 7.6e-11 71.2 58 56.9
CSS0004124 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D008675 7.6e-11 71.2 54 59.3
CiPaw.16G116800 Carya illinoinensis HOM05D000029 ORTHO05D008675 7.6e-11 71.2 54 57.4
CsaV3_2G003490 Cucumis sativus L. HOM05D000029 ORTHO05D008675 7.6e-11 71.2 55 56.4
AL8G25620 Arabidopsis lyrata HOM05D000029 ORTHO05D008675 1.3e-10 70.5 59 50.8
GSVIVG01001044001 Vitis vinifera HOM05D000029 ORTHO05D008675 1.3e-10 70.5 53 56.6
Migut.K00657 Erythranthe guttata HOM05D000029 ORTHO05D008675 1.7e-10 70.1 57 56.1
Sed0018893 Sechium edule HOM05D000029 ORTHO05D008675 1.7e-10 70.1 54 57.4
Rhsim01G0049200 Rhododendron simsii HOM05D000029 ORTHO05D008675 2.2e-10 69.7 54 57.4
TPR.G24777 Trifolium pratense HOM05D000029 ORTHO05D008675 2.2e-10 69.7 54 61.1
Carub.0008s1139 Capsella rubella HOM05D000029 ORTHO05D008675 3.8e-10 68.9 59 50.8
Sp5g06380 Schrenkiella parvula HOM05D000029 ORTHO05D008675 3.8e-10 68.9 59 49.2
Glyma.15G203600 Glycine max HOM05D000029 ORTHO05D008675 4.9e-10 68.6 54 57.4
MD15G1157800 Malus domestica HOM05D000029 ORTHO05D008675 4.9e-10 68.6 59 49.2
AT5G51350 Arabidopsis thaliana HOM05D000029 ORTHO05D008675 6.4e-10 68.2 59 50.8
Migut.K00662 Erythranthe guttata HOM05D000029 ORTHO05D008675 8.4e-10 67.8 53 58.5
Medtr2g029010 Medicago truncatula HOM05D000029 ORTHO05D008675 8.4e-10 67.8 53 56.6
Oeu028786.1 Olea europaea HOM05D000029 ORTHO05D008675 8.4e-10 67.8 54 57.4
vmacro21877 Vaccinium macrocarpon HOM05D000029 ORTHO05D008675 1.1e-09 67.4 54 57.4
Migut.K00363 Erythranthe guttata HOM05D000029 ORTHO05D008675 2.4e-09 66.2 57 52.6
Lalb_Chr11g0072811 Lupinus albus HOM05D000029 ORTHO05D008675 3.2e-09 65.9 54 55.6
Sopen07g001120 Solanum pennellii HOM05D000029 ORTHO05D008675 3.2e-09 65.9 58 51.7
Os08g0148300 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D008675 5.4e-09 65.1 81 44.4
C08p31430 Brassica napus HOM05D000029 ORTHO05D008675 7.1e-09 64.7 56 55.4
BraA09t40364Z Brassica rapa HOM05D000029 ORTHO05D008675 9.2e-09 64.3 55 58.2
MELO3C004449.2 Cucumis melo HOM05D000029 ORTHO05D008675 7.8e-08 61.2 54 53.7
Oeu040772.2 Olea europaea HOM05D000029 ORTHO05D008675 7.8e-08 61.2 70 47.1
SEGI_06646 Sequoiadendron giganteum HOM05D000071 ORTHO05D000029 7.8e-08 61.2 83 36.1
CAN.G520.39 Capsicum annuum HOM05D000029 ORTHO05D008675 1.0e-07 60.8 51 56.9
PGSC0003DMG400011833 Solanum tuberosum HOM05D000029 ORTHO05D008675 3.0e-07 59.3 54 50.0
A09p49120 Brassica napus HOM05D000029 ORTHO05D008675 1.1e-06 57.4 50 58.0
Solyc07g005010.4 Solanum lycopersicum HOM05D000029 ORTHO05D008675 1.1e-06 57.4 53 50.9
PSO210G4668 Papaver somniferum HOM05D000029 ORTHO05D008675 3.3e-06 55.8 52 53.8
Cpa.g.sc130.2 Carica papaya HOM05D000940 ORTHO05D000782 4.3e-06 55.5 81 35.8
QL04p093590 Quercus lobata HOM05D000071 ORTHO05D000029 4.3e-06 55.5 81 38.3


User provided reference genes

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