Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 1.4e-179 632.9 328 100.0
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 8.3e-124 447.6 331 74.0
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 2.5e-112 409.5 334 70.1
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 1.1e-94 350.9 302 65.6
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 3.1e-94 349.4 327 62.1
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 4.5e-93 345.5 336 60.4
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 1.3e-92 344.0 312 61.9
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 2.9e-92 342.8 209 83.7
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 3.8e-92 342.4 254 69.7
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 6.4e-92 341.7 304 61.2
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 1.4e-91 340.5 336 58.9
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 9.3e-91 337.8 330 60.0
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 9.3e-91 337.8 315 58.7
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 1.6e-90 337.0 330 58.2
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.6e-90 337.0 300 63.3
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 2.1e-90 336.7 300 63.3
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 2.7e-90 336.3 301 63.1
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 2.7e-90 336.3 325 59.7
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 4.6e-90 335.5 316 62.0
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.0e-89 332.8 300 63.3
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 6.6e-89 331.6 256 66.8
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 8.7e-89 331.3 330 57.9
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 8.7e-89 331.3 328 59.1
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 1.9e-88 330.1 324 57.4
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 3.3e-88 329.3 289 64.7
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 7.4e-88 328.2 278 61.9
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 1.6e-87 327.0 328 58.2
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 6.2e-87 325.1 285 62.8
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 6.2e-87 325.1 311 59.5
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 1.4e-86 323.9 302 60.9
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.4e-86 323.9 310 61.0
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 3.1e-86 322.8 278 61.5
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 4.0e-86 322.4 260 68.8
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 9.0e-86 321.2 234 69.2
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 1.2e-85 320.9 258 65.5
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 2.0e-85 320.1 268 63.8
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 3.4e-85 319.3 255 66.3
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 3.4e-85 319.3 311 57.6
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 4.5e-85 318.9 323 56.0
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 4.5e-85 318.9 332 54.8
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 5.8e-85 318.5 281 63.0
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 7.6e-85 318.2 315 57.1
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 7.6e-85 318.2 263 64.6
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 1.3e-84 317.4 376 51.3
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 2.2e-84 316.6 321 57.3
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 2.9e-84 316.2 260 66.9
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 3.8e-84 315.8 326 54.3
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 4.9e-84 315.5 323 55.1
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 8.4e-84 314.7 330 55.8
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 8.4e-84 314.7 290 60.7
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 1.4e-83 313.9 257 65.8
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 1.4e-83 313.9 332 55.4
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 4.2e-83 312.4 340 54.7
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 4.2e-83 312.4 294 59.5
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 4.2e-83 312.4 318 56.0
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 5.5e-83 312.0 290 59.0
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 7.1e-83 311.6 326 57.1
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 2.1e-82 310.1 261 64.8
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 2.1e-82 310.1 238 67.6
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 2.7e-82 309.7 327 55.4
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 2.7e-82 309.7 253 64.8
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 2.7e-82 309.7 258 65.1
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 3.5e-82 309.3 235 68.1
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 3.5e-82 309.3 251 64.9
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 3.5e-82 309.3 258 64.0
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 6.0e-82 308.5 282 60.6
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 7.9e-82 308.1 300 59.3
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 1.0e-81 307.8 299 58.5
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 2.3e-81 306.6 233 67.8
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 2.3e-81 306.6 276 60.5
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 3.0e-81 306.2 323 55.7
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 1.1e-80 304.3 261 63.6
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 1.5e-80 303.9 329 53.2
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 2.5e-80 303.1 300 57.0
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 3.3e-80 302.8 267 62.9
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 3.3e-80 302.8 267 62.9
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 3.3e-80 302.8 214 71.5
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 7.4e-80 301.6 263 63.1
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 1.3e-79 300.8 326 55.5
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 2.1e-79 300.1 326 55.2
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 2.1e-79 300.1 202 76.2
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 8.1e-79 298.1 321 56.4
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 1.4e-78 297.4 324 54.6
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 1.8e-78 297.0 257 62.6
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 2.4e-78 296.6 316 56.0
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 5.3e-78 295.4 326 54.0
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 3.4e-77 292.7 347 51.3
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 5.8e-77 292.0 286 57.7
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 2.2e-76 290.0 215 71.2
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 2.9e-76 289.7 300 58.3
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 2.9e-76 289.7 317 54.6
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 4.9e-76 288.9 198 72.7
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 8.4e-76 288.1 304 57.6
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 1.4e-75 287.3 329 53.2
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 5.5e-75 285.4 197 73.1
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 7.9e-74 281.6 312 54.2
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 2.3e-73 280.0 304 56.9
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 2.3e-73 280.0 327 50.5
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 3.0e-73 279.6 276 57.2
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 5.1e-73 278.9 315 52.4
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 8.7e-73 278.1 259 60.2
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 8.7e-73 278.1 290 53.4
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 1.4e-70 270.8 202 67.8
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 3.9e-65 252.7 240 55.0
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 1.0e-60 238.0 199 62.8
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 1.1e-59 234.6 274 49.6
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 1.6e-58 230.7 196 57.7
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 2.7e-58 229.9 257 49.0
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 7.9e-58 228.4 230 50.9
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 1.2e-53 214.5 268 46.6
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 2.2e-52 210.3 252 49.2
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 2.3e-49 200.3 150 68.0
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 5.7e-32 142.5 181 46.4
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 3.5e-29 133.3 191 47.6
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 5.9e-29 132.5 110 59.1
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 2.9e-28 130.2 180 47.8
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.3e-15 88.2 90 57.8
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 8.3e-15 85.5 90 54.4
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 4.0e-09 66.6 50 68.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 1.5e-08 64.7 51 68.6
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 2.9e-07 60.5 106 43.4


User provided reference genes

Program Settings