Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0477181 Helianthus annuus HOM05D006290 ORTHO05D007734 1.9e-66 255.8 135 100.0
HanXRQChr17g0552191 Helianthus annuus HOM05D006290 ORTHO05D007734 9.3e-29 130.6 105 64.8
ECA234G1725 Erigeron canadensis HOM05D006290 ORTHO05D007734 2.6e-23 112.5 115 54.8
HanXRQChr16g0529651 Helianthus annuus HOM05D006290 ORTHO05D007734 4.9e-22 108.2 116 55.2
ECA246G4651 Erigeron canadensis HOM05D006290 ORTHO05D007734 8.4e-22 107.5 87 65.5
HanXRQChr17g0567961 Helianthus annuus HOM05D006290 ORTHO05D007734 1.9e-21 106.3 109 59.6
Lsat_1_v5_gn_4_18480 Lactuca sativa HOM05D006290 ORTHO05D007734 3.6e-17 92.0 124 50.8
DCAR_007237 Daucus carota HOM05D006290 ORTHO05D007734 6.4e-14 81.3 96 50.0
Atru.chr11.1291 Acer truncatum HOM05D006290 ORTHO05D007734 8.4e-14 80.9 126 41.3
Dinv21105 Davidia involucrata HOM05D001580 ORTHO05D001517 4.2e-13 78.6 102 47.1
vmacro10549 Vaccinium macrocarpon HOM05D006290 ORTHO05D007734 2.1e-12 76.3 111 42.3
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 3.5e-12 75.5 91 47.3
QL01p043858 Quercus lobata HOM05D006290 ORTHO05D007734 4.6e-12 75.1 116 43.1
DCAR_023668 Daucus carota HOM05D000325 ORTHO05D002981 6.0e-12 74.7 57 68.4
Hma1.2p1_3293F.1_g334960 Hydrangea macrophylla HOM05D006290 ORTHO05D007734 6.0e-12 74.7 114 42.1
Actinidia16641 Actinidia chinensis HOM05D006290 ORTHO05D007734 1.0e-11 73.9 96 46.9
Nitab4.5_0001914g0020 Nicotiana tabacum HOM05D006290 ORTHO05D007734 1.0e-11 73.9 96 44.8
Peaxi162Scf00004g01813 Petunia axillaris HOM05D006290 ORTHO05D007734 1.0e-11 73.9 68 55.9
Potri.008G119300 Populus trichocarpa HOM05D006290 ORTHO05D007734 1.8e-11 73.2 94 48.9
GSVIVG01011914001 Vitis vinifera HOM05D006290 ORTHO05D007734 1.8e-11 73.2 97 41.2
Oeu033294.1 Olea europaea HOM05D006290 ORTHO05D007734 2.3e-11 72.8 96 43.8
arahy.Tifrunner.gnm1.ann1.N6V5UD Arachis hypogaea HOM05D006290 ORTHO05D007734 3.0e-11 72.4 100 41.0
Medtr1g111150 Medicago truncatula HOM05D006290 ORTHO05D007734 6.7e-11 71.2 98 42.9
TPR.G26319 Trifolium pratense HOM05D006290 ORTHO05D007734 6.7e-11 71.2 122 38.5
arahy.Tifrunner.gnm1.ann1.89WS3K Arachis hypogaea HOM05D006290 ORTHO05D007734 8.7e-11 70.9 100 40.0
Cfa018610 Carpinus fangiana HOM05D006290 ORTHO05D007734 8.7e-11 70.9 108 45.4
SGA_v2.0_scaffold124G33547 Striga asiatica HOM05D006290 ORTHO05D007734 1.9e-10 69.7 96 45.8
Haze_17464 Corylus avellana HOM05D006290 ORTHO05D007734 3.3e-10 68.9 108 44.4
MD13G1043600 Malus domestica HOM05D006290 ORTHO05D007734 3.3e-10 68.9 105 43.8
Medtr5g055200 Medicago truncatula HOM05D006290 ORTHO05D007734 5.6e-10 68.2 122 38.5
Oeu020586.1 Olea europaea HOM05D006290 ORTHO05D007734 5.6e-10 68.2 98 40.8
TWI79G1749 Tripterygium wilfordii HOM05D006290 ORTHO05D007734 5.6e-10 68.2 112 40.2
CiPaw.15G083600 Carya illinoinensis HOM05D006290 ORTHO05D007734 7.4e-10 67.8 101 40.6
MSTRG.826 Avicennia marina HOM05D006290 ORTHO05D007734 9.6e-10 67.4 96 43.8
Hund05756 Selenicereus undatus HOM05D006290 ORTHO05D007734 1.3e-09 67.0 96 40.6
MSTRG.13517 Avicennia marina HOM05D006290 ORTHO05D007734 2.1e-09 66.2 87 39.1
Lj2g0005219 Lotus japonicus HOM05D006290 ORTHO05D007734 2.1e-09 66.2 117 40.2
Sabra10G0096300 Salix brachista HOM05D006290 ORTHO05D007734 2.1e-09 66.2 108 43.5
Thecc.02G357300 Theobroma cacao HOM05D006290 ORTHO05D007734 2.1e-09 66.2 109 42.2
Ca_11183_v3 Cicer arietinum L. HOM05D006290 ORTHO05D007734 2.8e-09 65.9 97 42.3
Migut.L01076 Erythranthe guttata HOM05D006290 ORTHO05D007734 2.8e-09 65.9 95 44.2
Phvul.007G026200 Phaseolus vulgaris HOM05D006290 ORTHO05D007734 2.8e-09 65.9 95 44.2
Potri.010G126800 Populus trichocarpa HOM05D006290 ORTHO05D007734 2.8e-09 65.9 106 45.3
PGR119G1521 Punica granatum HOM05D006290 ORTHO05D007734 2.8e-09 65.9 102 38.2
Gorai.008G184100 Gossypium raimondii HOM05D006290 ORTHO05D007734 3.7e-09 65.5 96 41.7
TPR.G38332 Trifolium pratense HOM05D006290 ORTHO05D007734 4.8e-09 65.1 124 36.3
Manes.14G100600 Manihot esculenta HOM05D006290 ORTHO05D007734 6.2e-09 64.7 99 44.4
Duzib251G0521 Durio zibethinus HOM05D006290 ORTHO05D007734 8.2e-09 64.3 117 41.0
Lalb_Chr21g0309011 Lupinus albus HOM05D006290 ORTHO05D007734 8.2e-09 64.3 103 38.8
Glyma.10G275300 Glycine max HOM05D006290 ORTHO05D007734 1.1e-08 63.9 96 42.7
Lj5g0001389 Lotus japonicus HOM05D006290 ORTHO05D007734 1.1e-08 63.9 58 51.7
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 1.1e-08 63.9 77 53.2
Eucgr.G02333 Eucalyptus grandis HOM05D006290 ORTHO05D007734 1.4e-08 63.5 100 43.0
FvH4_4g27620 Fragaria vesca HOM05D006290 ORTHO05D007734 1.4e-08 63.5 97 43.3
Lalb_Chr17g0342051 Lupinus albus HOM05D006290 ORTHO05D007734 1.4e-08 63.5 96 39.6
EL10Ac6g14437 Beta vulgaris HOM05D006290 ORTHO05D007734 1.8e-08 63.2 101 44.6
TWI75G0318 Tripterygium wilfordii HOM05D006290 ORTHO05D007734 1.8e-08 63.2 106 41.5
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 2.4e-08 62.8 59 55.9
Lsat_1_v5_gn_3_59640 Lactuca sativa HOM05D002109 ORTHO05D002149 2.4e-08 62.8 57 57.9
Glyma.01G082500 Glycine max HOM05D006290 ORTHO05D007734 3.1e-08 62.4 99 41.4
Glyma.20G114400 Glycine max HOM05D006290 ORTHO05D007734 3.1e-08 62.4 96 42.7
Gohir.A12G168000 Gossypium hirsutum HOM05D006290 ORTHO05D007734 6.9e-08 61.2 96 41.7
Psat6g229000 Pisum sativum HOM05D006290 ORTHO05D007734 6.9e-08 61.2 105 38.1
CANSAT64G2445 Cannabis sativa HOM05D006290 ORTHO05D007734 9.0e-08 60.8 97 39.2
Sc14g0007550 Simmondsia chinensis HOM05D006290 ORTHO05D007734 9.0e-08 60.8 112 36.6
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 1.2e-07 60.5 118 38.1
Glyma.08G263700 Glycine max HOM05D006290 ORTHO05D007734 1.2e-07 60.5 96 38.5
Gohir.D12G171600 Gossypium hirsutum HOM05D006290 ORTHO05D007734 1.2e-07 60.5 96 41.7
Nitab4.5_0003285g0030 Nicotiana tabacum HOM05D006290 ORTHO05D007734 1.2e-07 60.5 119 37.0
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 1.5e-07 60.1 63 47.6
Phvul.003G034800 Phaseolus vulgaris HOM05D006290 ORTHO05D007734 2.0e-07 59.7 100 40.0
BcaB05g24400 Brassica carinata HOM05D006290 ORTHO05D007734 4.5e-07 58.5 87 37.9
A07p31920 Brassica napus HOM05D006290 ORTHO05D007734 4.5e-07 58.5 87 37.9
C06p37490 Brassica napus HOM05D006290 ORTHO05D007734 4.5e-07 58.5 87 37.9
BolC6t38851H Brassica oleracea HOM05D006290 ORTHO05D007734 4.5e-07 58.5 87 37.9
BraA07t30820Z Brassica rapa HOM05D006290 ORTHO05D007734 4.5e-07 58.5 87 37.9
CARHR061380 Cardamine hirsuta HOM05D006290 ORTHO05D007734 1.0e-06 57.4 93 40.9
Solyc05g150121.1 Solanum lycopersicum HOM05D006290 ORTHO05D007734 1.0e-06 57.4 67 46.3
BraA02t06584Z Brassica rapa HOM05D006290 ORTHO05D007734 1.3e-06 57.0 87 36.8
Nn4g23807 Nelumbo nucifera HOM05D006290 ORTHO05D007734 1.3e-06 57.0 57 49.1
THA.LOC104821947 Tarenaya hassleriana HOM05D006290 ORTHO05D007734 1.3e-06 57.0 115 40.0
A02p15210 Brassica napus HOM05D006290 ORTHO05D007734 1.7e-06 56.6 87 36.8
C02p25020 Brassica napus HOM05D006290 ORTHO05D007734 1.7e-06 56.6 87 36.8
BolC2t08586H Brassica oleracea HOM05D006290 ORTHO05D007734 1.7e-06 56.6 87 36.8
Lalb_Chr10g0099941 Lupinus albus HOM05D006290 ORTHO05D007734 2.9e-06 55.8 84 42.9
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 2.9e-06 55.8 66 48.5
ClCG05G022830 Citrullus lanatus HOM05D006290 ORTHO05D007734 4.9e-06 55.1 66 45.5
unitig_26.g10264 Utricularia gibba HOM05D000483 ORTHO05D000158 6.5e-06 54.7 63 44.4
Aa31sc179G60 Aethionema arabicum HOM05D006290 ORTHO05D007734 8.4e-06 54.3 63 49.2
Sed0010442 Sechium edule HOM05D006290 ORTHO05D007734 8.4e-06 54.3 97 36.1


User provided reference genes

Program Settings