Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 3.5e-52 208.0 105 100.0
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.2e-36 156.4 100 81.0
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 3.6e-36 154.8 100 78.0
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 1.0e-35 153.3 100 77.0
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 8.8e-35 150.2 100 74.0
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 2.6e-34 148.7 100 74.0
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 4.4e-34 147.9 99 77.8
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 4.8e-33 144.4 99 72.7
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 1.1e-32 143.3 99 71.7
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 2.4e-32 142.1 99 72.7
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 3.1e-32 141.7 99 71.7
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 3.1e-32 141.7 99 70.7
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 3.1e-32 141.7 101 70.3
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 5.3e-32 141.0 99 70.7
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 7.0e-32 140.6 99 70.7
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 9.1e-32 140.2 100 69.0
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 1.2e-31 139.8 100 69.0
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.2e-31 139.8 98 70.4
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 1.6e-31 139.4 99 69.7
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 1.6e-31 139.4 104 67.3
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 2.0e-31 139.0 100 68.0
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 2.6e-31 138.7 98 70.4
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 5.9e-31 137.5 99 67.7
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 7.7e-31 137.1 100 70.0
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 1.0e-30 136.7 100 68.0
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 1.7e-30 136.0 100 67.0
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.7e-30 136.0 100 67.0
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.7e-30 136.0 100 67.0
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.7e-30 136.0 100 65.0
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 1.7e-30 136.0 98 72.4
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 2.9e-30 135.2 99 66.7
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 2.9e-30 135.2 99 68.7
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 3.8e-30 134.8 100 65.0
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 5.0e-30 134.4 99 66.7
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 5.0e-30 134.4 99 68.7
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 5.0e-30 134.4 96 70.8
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 6.5e-30 134.0 99 67.7
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 8.5e-30 133.7 100 69.0
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 1.1e-29 133.3 100 61.0
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 1.1e-29 133.3 100 68.0
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 1.1e-29 133.3 96 70.8
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 1.9e-29 132.5 100 68.0
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.9e-29 132.5 100 61.0
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 1.9e-29 132.5 100 68.0
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 1.9e-29 132.5 99 66.7
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 1.9e-29 132.5 100 67.0
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 1.9e-29 132.5 100 63.0
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.5e-29 132.1 101 63.4
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 3.2e-29 131.7 100 68.0
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 3.2e-29 131.7 94 72.3
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 3.2e-29 131.7 96 69.8
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 3.2e-29 131.7 96 69.8
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 4.2e-29 131.3 96 69.8
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 4.2e-29 131.3 101 66.3
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 5.5e-29 131.0 95 69.5
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 5.5e-29 131.0 100 65.0
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 9.4e-29 130.2 100 60.0
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 9.4e-29 130.2 96 65.6
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.6e-28 129.4 99 65.7
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.1e-28 129.0 101 64.4
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 2.7e-28 128.6 99 65.7
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 3.6e-28 128.3 100 60.0
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 4.7e-28 127.9 100 60.0
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 4.7e-28 127.9 95 67.4
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 4.7e-28 127.9 96 64.6
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 4.7e-28 127.9 100 64.0
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 6.1e-28 127.5 99 64.6
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 1.8e-27 125.9 97 64.9
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 1.8e-27 125.9 100 62.0
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 1.8e-27 125.9 100 62.0
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 3.0e-27 125.2 99 66.7
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 3.0e-27 125.2 96 67.7
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 4.0e-27 124.8 98 63.3
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 4.0e-27 124.8 89 69.7
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 4.0e-27 124.8 92 65.2
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 6.7e-27 124.0 100 58.0
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 1.5e-26 122.9 100 61.0
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.0e-26 122.5 97 62.9
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 4.4e-26 121.3 105 61.0
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 5.7e-26 120.9 99 62.6
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.3e-25 119.8 99 61.6
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 1.7e-25 119.4 95 64.2
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.7e-25 119.4 99 60.6
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.2e-25 119.0 99 61.6
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.2e-25 119.0 99 60.6
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 4.8e-25 117.9 84 70.2
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 6.3e-25 117.5 95 62.1
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 6.3e-25 117.5 105 59.0
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 6.3e-25 117.5 98 59.2
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 6.3e-25 117.5 97 62.9
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 8.2e-25 117.1 94 63.8
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 8.2e-25 117.1 100 61.0
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 1.8e-24 115.9 89 64.0
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.4e-24 115.5 83 69.9
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 3.1e-24 115.2 99 60.6
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 3.1e-24 115.2 99 60.6
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 3.1e-24 115.2 99 60.6
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 3.1e-24 115.2 99 61.6
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 5.3e-24 114.4 82 72.0
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.2e-23 113.2 90 61.1
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.6e-23 112.8 103 56.3
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 1.6e-23 112.8 95 57.9
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 3.2e-21 105.1 99 58.6
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 7.2e-21 104.0 112 52.7
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 9.4e-21 103.6 100 52.0
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.2e-20 103.2 83 61.4
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 1.0e-19 100.1 95 49.5
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 1.8e-19 99.4 85 61.2
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 1.8e-19 99.4 74 66.2
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 5.2e-19 97.8 92 58.7
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 5.7e-18 94.4 66 72.7
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 2.8e-17 92.0 96 49.0
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 3.1e-16 88.6 58 75.9
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 5.4e-16 87.8 58 74.1
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 7.0e-16 87.4 53 77.4
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 7.0e-16 87.4 58 75.9
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 9.1e-16 87.0 58 74.1
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 5.9e-15 84.3 68 64.7
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 5.9e-15 84.3 55 69.1
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 5.9e-15 84.3 100 49.0
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 7.7e-15 84.0 58 69.0
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 5.0e-14 81.3 84 48.8
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 4.4e-10 68.2 85 48.2
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 1.6e-07 59.7 38 71.1
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 6.6e-06 54.3 41 63.4


User provided reference genes

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