Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 8.3e-67 256.9 131 100.0
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.1e-61 240.0 132 94.7
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 9.8e-60 233.4 131 90.8
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 8.6e-56 220.3 116 96.6
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 1.7e-48 196.1 125 80.0
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 8.6e-48 193.7 121 78.5
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 8.6e-48 193.7 119 79.8
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.1e-47 193.4 129 74.4
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 1.5e-47 193.0 130 75.4
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.5e-47 192.2 129 72.9
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 9.6e-47 190.3 117 81.2
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 1.2e-46 189.9 122 77.0
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 2.1e-46 189.1 129 75.2
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 3.6e-46 188.3 120 76.7
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 3.6e-46 188.3 126 76.2
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 1.1e-45 186.8 119 74.8
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 1.4e-45 186.4 126 75.4
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 1.4e-45 186.4 120 76.7
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 1.4e-45 186.4 120 77.5
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 1.8e-45 186.0 122 77.0
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 2.4e-45 185.7 118 77.1
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 3.1e-45 185.3 120 76.7
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 4.0e-45 184.9 115 79.1
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 4.0e-45 184.9 126 74.6
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 1.2e-44 183.3 115 80.0
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 1.2e-44 183.3 126 74.6
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 2.0e-44 182.6 120 75.8
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 2.0e-44 182.6 121 74.4
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 2.0e-44 182.6 118 75.4
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 2.6e-44 182.2 118 76.3
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.6e-44 182.2 118 75.4
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.6e-44 182.2 118 75.4
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 2.6e-44 182.2 118 75.4
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 3.4e-44 181.8 133 70.7
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 3.4e-44 181.8 119 73.9
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 3.4e-44 181.8 118 73.7
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 3.4e-44 181.8 120 73.3
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 5.8e-44 181.0 121 75.2
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 5.8e-44 181.0 116 78.4
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 7.6e-44 180.6 133 70.7
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 7.6e-44 180.6 126 71.4
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 7.6e-44 180.6 120 72.5
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 9.9e-44 180.3 116 77.6
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 9.9e-44 180.3 122 71.3
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 1.3e-43 179.9 115 76.5
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 2.2e-43 179.1 137 71.5
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 2.2e-43 179.1 139 69.1
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 2.2e-43 179.1 139 69.1
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 2.2e-43 179.1 113 77.9
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 2.2e-43 179.1 122 73.0
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 2.9e-43 178.7 116 77.6
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 4.9e-43 177.9 114 75.4
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 6.4e-43 177.6 120 70.8
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 8.4e-43 177.2 114 78.1
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 1.1e-42 176.8 120 74.2
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 1.1e-42 176.8 120 70.8
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.4e-42 176.4 122 73.8
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 1.4e-42 176.4 121 71.9
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 1.9e-42 176.0 118 73.7
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 3.2e-42 175.3 116 76.7
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 4.2e-42 174.9 140 67.1
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 4.2e-42 174.9 121 74.4
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 5.4e-42 174.5 116 75.9
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 9.3e-42 173.7 122 71.3
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 1.2e-41 173.3 121 74.4
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 1.2e-41 173.3 144 62.5
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 1.2e-41 173.3 144 62.5
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 1.6e-41 172.9 132 66.7
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 2.7e-41 172.2 116 73.3
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 6.0e-41 171.0 120 72.5
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 7.8e-41 170.6 121 73.6
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 1.0e-40 170.2 120 68.3
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.0e-40 170.2 117 74.4
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 3.0e-40 168.7 125 70.4
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 3.0e-40 168.7 133 68.4
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 3.9e-40 168.3 124 68.5
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 6.6e-40 167.5 116 70.7
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 8.7e-40 167.2 150 62.7
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 1.9e-39 166.0 113 75.2
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 3.3e-39 165.2 114 71.1
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 4.3e-39 164.9 118 68.6
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 5.6e-39 164.5 136 66.2
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 5.6e-39 164.5 126 67.5
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 7.3e-39 164.1 120 72.5
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 9.6e-39 163.7 117 67.5
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 1.8e-37 159.5 118 66.9
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.8e-37 159.5 156 55.8
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 4.0e-37 158.3 127 66.1
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 3.4e-36 155.2 115 65.2
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 9.9e-36 153.7 177 49.7
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 2.9e-35 152.1 118 63.6
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 3.8e-35 151.8 120 65.8
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 4.9e-35 151.4 107 69.2
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 8.4e-35 150.6 90 78.9
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 8.4e-35 150.6 131 63.4
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 2.4e-34 149.1 88 79.5
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 7.1e-34 147.5 132 59.1
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.1e-33 146.0 115 67.8
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 7.9e-33 144.1 134 61.2
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 7.9e-33 144.1 128 56.2
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 1.3e-32 143.3 132 59.1
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.7e-32 142.9 115 67.0
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.1e-31 140.2 114 66.7
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.5e-31 139.8 132 57.6
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 2.5e-31 139.0 119 62.2
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 2.5e-31 139.0 120 60.0
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 1.3e-30 136.7 121 62.0
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 2.1e-30 136.0 170 47.6
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 3.6e-30 135.2 85 76.5
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 4.8e-30 134.8 131 59.5
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.8e-29 132.9 84 77.4
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 5.3e-29 131.3 100 69.0
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 6.9e-29 131.0 111 64.0
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.2e-28 130.2 128 53.9
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 2.6e-28 129.0 111 63.1
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 9.9e-28 127.1 106 61.3
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 1.6e-25 119.8 112 52.7
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 7.9e-25 117.5 126 54.0
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 3.0e-24 115.5 177 40.7
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 1.5e-23 113.2 101 54.5
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 9.6e-23 110.5 70 72.9
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 1.6e-22 109.8 70 71.4
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 1.1e-21 107.1 69 73.9
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 2.1e-17 92.8 82 59.8
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 3.1e-13 79.0 96 42.7
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 6.9e-13 77.8 83 55.4
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 6.9e-13 77.8 60 65.0
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 5.5e-10 68.2 51 60.8
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 1.6e-09 66.6 49 65.3
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 3.5e-09 65.5 47 70.2
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 7.9e-09 64.3 50 66.0


User provided reference genes

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