Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 8.0e-103 377.1 189 100.0
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 2.8e-92 342.0 185 91.9
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.6e-90 336.3 187 88.8
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 5.5e-88 327.8 186 87.6
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 5.7e-77 291.2 184 77.2
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 2.2e-76 289.3 187 75.9
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 2.2e-76 289.3 187 75.9
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 2.0e-74 282.7 187 73.8
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 1.0e-73 280.4 187 74.3
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 5.0e-73 278.1 182 74.2
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 8.6e-73 277.3 182 74.7
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 1.1e-72 276.9 187 71.7
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.1e-72 276.9 187 71.7
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 1.9e-72 276.2 185 73.0
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 4.3e-72 275.0 187 70.6
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 4.3e-72 275.0 182 75.3
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 4.3e-72 275.0 182 75.3
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 5.6e-72 274.6 182 75.3
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.2e-71 273.5 187 70.6
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 2.1e-71 272.7 186 70.4
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.4e-70 270.0 184 71.2
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.4e-70 270.0 184 71.2
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 2.3e-70 269.2 187 71.1
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 2.3e-70 269.2 189 70.4
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 3.1e-70 268.9 182 73.1
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 4.0e-70 268.5 181 70.2
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.0e-70 268.5 184 71.2
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.0e-70 268.5 184 71.2
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 5.2e-70 268.1 197 70.6
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 5.2e-70 268.1 182 70.3
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 6.8e-70 267.7 188 69.7
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 2.6e-69 265.8 184 70.1
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 2.6e-69 265.8 187 70.6
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 3.4e-69 265.4 182 70.9
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 4.4e-69 265.0 188 69.7
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 5.8e-69 264.6 187 70.6
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 7.5e-69 264.2 209 64.1
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 7.5e-69 264.2 187 69.5
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 9.8e-69 263.8 187 70.6
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 1.3e-68 263.5 207 64.7
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 1.3e-68 263.5 187 70.1
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 4.9e-68 261.5 182 72.5
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 6.4e-68 261.2 181 71.3
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 3.2e-67 258.8 187 67.9
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 5.4e-67 258.1 187 67.9
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.6e-66 256.5 187 66.8
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 2.0e-66 256.1 182 68.7
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 2.0e-66 256.1 177 69.5
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 2.0e-66 256.1 182 69.2
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.6e-66 255.0 189 68.3
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 6.0e-66 254.6 182 68.7
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 7.8e-66 254.2 177 68.4
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.3e-65 253.4 182 66.5
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 6.6e-65 251.1 189 66.1
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 8.6e-65 250.8 182 66.5
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.1e-64 250.4 185 65.4
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 1.5e-64 250.0 184 67.4
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 1.5e-64 250.0 184 66.8
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 1.9e-64 249.6 174 70.1
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 1.9e-64 249.6 183 68.3
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 3.3e-64 248.8 182 67.0
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 4.3e-64 248.4 175 68.6
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 4.3e-64 248.4 184 67.9
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.6e-64 248.1 184 68.5
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 7.3e-64 247.7 183 68.3
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 7.3e-64 247.7 189 67.7
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 1.2e-63 246.9 174 70.1
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 1.6e-63 246.5 182 66.5
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 1.6e-63 246.5 184 67.9
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.8e-63 245.7 178 69.7
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.8e-63 245.7 178 69.7
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.6e-63 245.4 184 67.9
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 3.6e-63 245.4 175 68.0
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 8.0e-63 244.2 182 65.4
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 8.0e-63 244.2 182 64.3
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.8e-62 243.0 183 64.5
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 1.8e-62 243.0 188 63.8
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.8e-62 243.0 178 68.5
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 2.3e-62 242.7 187 64.2
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 5.2e-62 241.5 189 64.6
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 1.2e-61 240.4 182 64.3
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.5e-61 240.0 178 68.0
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 2.6e-61 239.2 197 61.4
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 2.6e-61 239.2 183 66.1
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 4.4e-61 238.4 197 61.4
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 7.5e-61 237.7 175 63.4
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 7.5e-61 237.7 158 74.1
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 9.8e-61 237.3 178 65.2
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 1.3e-60 236.9 186 65.1
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 1.9e-59 233.0 174 65.5
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 2.4e-59 232.6 174 64.9
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 3.2e-59 232.3 152 73.0
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 5.4e-59 231.5 206 58.7
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 5.4e-59 231.5 182 62.1
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 9.2e-59 230.7 182 61.5
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 7.8e-58 227.6 193 59.6
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 8.6e-57 224.2 150 72.0
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 8.6e-57 224.2 273 47.3
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.9e-56 223.0 178 61.8
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 2.8e-55 219.2 181 57.5
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.9e-52 209.1 156 64.7
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 1.6e-50 203.4 182 53.8
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 1.6e-50 203.4 182 54.4
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 3.9e-49 198.7 182 53.8
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 6.6e-49 198.0 182 52.7
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 1.9e-48 196.4 182 52.7
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 5.6e-48 194.9 182 52.7
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 2.8e-47 192.6 182 57.7
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 3.6e-47 192.2 182 52.7
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 1.2e-45 187.2 182 51.6
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 9.9e-45 184.1 182 51.6
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 3.8e-44 182.2 172 59.9
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 1.9e-43 179.9 182 50.0
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 3.2e-43 179.1 207 50.2
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 5.4e-43 178.3 182 49.5
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 5.4e-43 178.3 182 49.5
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 5.4e-43 178.3 182 49.5
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 6.6e-41 171.4 182 47.8
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 4.3e-40 168.7 182 46.7
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 4.3e-40 168.7 182 46.7
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 5.8e-37 158.3 148 53.4
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.3e-36 157.1 120 66.7
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 7.1e-35 151.4 155 55.5
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 3.0e-33 146.0 176 46.0
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.1e-30 137.5 110 63.6
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 8.7e-25 117.9 86 67.4
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.5e-24 116.3 87 64.4
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 3.7e-23 112.5 96 60.4
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 8.1e-23 111.3 80 66.2
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 2.6e-21 106.3 80 65.0
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 5.8e-21 105.1 79 63.3
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.7e-20 103.6 75 65.3
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.7e-20 103.6 79 62.0
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 1.4e-19 100.5 73 65.8
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 2.5e-19 99.8 159 37.1
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 3.2e-19 99.4 155 39.4
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 2.1e-18 96.7 163 38.7
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 4.3e-16 89.0 61 72.1
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 1.8e-14 83.6 97 48.5
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 5.5e-11 72.0 90 48.9
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 9.3e-11 71.2 64 57.8
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 1.2e-10 70.9 119 34.5


User provided reference genes

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