Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 1.1e-262 909.4 450 100.0
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 6.5e-228 793.9 453 87.2
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 2.6e-224 781.9 454 84.4
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 1.6e-197 693.0 458 73.8
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 2.5e-195 685.6 459 74.7
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 7.0e-190 667.5 458 72.7
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 9.2e-190 667.2 461 72.5
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 9.2e-190 667.2 458 72.5
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 1.2e-189 666.8 457 72.2
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 5.9e-189 664.5 458 72.3
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 1.0e-188 663.7 463 70.8
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 2.3e-188 662.5 462 71.0
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 5.0e-188 661.4 458 71.6
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 9.5e-187 657.1 458 72.3
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 1.6e-186 656.4 458 71.4
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 2.1e-186 656.0 458 71.8
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 1.5e-184 649.8 458 69.4
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 2.0e-184 649.4 458 70.3
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 3.4e-184 648.7 457 68.9
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 4.4e-184 648.3 460 69.1
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 2.2e-183 646.0 458 70.7
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 2.9e-183 645.6 461 68.8
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 2.9e-183 645.6 457 70.2
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 3.7e-183 645.2 462 68.6
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 4.9e-183 644.8 462 70.1
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 2.4e-182 642.5 464 69.6
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 4.1e-182 641.7 476 68.5
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 5.4e-182 641.3 475 69.1
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 1.6e-181 639.8 464 69.2
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 2.7e-181 639.0 458 69.2
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 3.5e-181 638.6 456 70.4
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 4.6e-181 638.3 460 70.4
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 1.0e-180 637.1 464 70.5
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 1.3e-180 636.7 458 68.6
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 5.0e-180 634.8 458 68.8
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 6.6e-180 634.4 458 68.8
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 8.6e-180 634.0 457 67.8
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 8.6e-180 634.0 458 68.8
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 1.1e-179 633.6 461 68.8
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 1.5e-179 633.3 458 68.3
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 1.5e-179 633.3 463 66.7
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 1.5e-179 633.3 462 69.5
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 1.5e-179 633.3 458 67.5
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 1.9e-179 632.9 451 69.8
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 1.9e-179 632.9 457 70.2
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 4.3e-179 631.7 475 67.2
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 4.3e-179 631.7 456 69.5
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 7.3e-179 630.9 458 68.1
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 7.3e-179 630.9 462 66.9
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 9.5e-179 630.6 456 68.6
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 6.2e-178 627.9 458 68.1
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.1e-177 627.1 458 67.9
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 1.8e-177 626.3 462 68.4
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 4.0e-177 625.2 458 67.2
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 5.2e-177 624.8 457 67.6
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 5.2e-177 624.8 457 67.6
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 5.2e-177 624.8 462 68.6
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 5.2e-177 624.8 462 68.2
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 6.8e-177 624.4 467 67.2
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 8.9e-177 624.0 462 66.7
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 2.6e-176 622.5 461 68.1
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 3.4e-176 622.1 455 67.9
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 4.4e-176 621.7 456 67.5
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 4.4e-176 621.7 461 67.9
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 7.5e-176 620.9 462 69.3
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 2.9e-175 619.0 464 66.4
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 8.3e-175 617.5 458 66.8
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 1.4e-174 616.7 459 68.0
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 2.4e-174 615.9 458 67.5
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 1.3e-172 610.1 459 66.0
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 1.3e-172 610.1 458 65.9
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 3.9e-172 608.6 470 65.7
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 7.3e-171 604.4 500 60.8
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 9.5e-171 604.0 460 65.9
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 1.6e-170 603.2 457 65.0
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 8.1e-170 600.9 469 64.4
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 1.7e-167 593.2 442 66.3
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 1.7e-167 593.2 427 69.6
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 2.2e-167 592.8 463 64.4
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 1.0e-164 583.9 465 62.4
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 2.3e-164 582.8 461 64.0
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 1.5e-163 580.1 461 63.8
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 2.6e-160 569.3 459 63.4
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 9.9e-160 567.4 512 57.6
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 1.6e-157 560.1 401 66.8
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 7.8e-157 557.8 459 63.0
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 6.6e-156 554.7 458 61.4
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 2.8e-154 549.3 414 65.7
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 4.4e-152 542.0 456 59.6
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 1.4e-150 537.0 460 62.0
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 2.3e-148 529.6 412 64.3
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 6.6e-148 528.1 475 60.0
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 4.8e-146 521.9 425 62.6
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 8.1e-146 521.2 462 60.0
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 1.4e-142 510.4 466 58.2
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 7.9e-141 504.6 475 58.1
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 2.6e-128 463.0 306 72.2
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 1.1e-123 447.6 455 51.4
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 1.6e-122 443.7 417 58.3
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 6.9e-121 438.3 341 63.6
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 8.5e-119 431.4 295 72.5
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 3.2e-110 402.9 282 68.1
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 1.8e-105 387.1 302 63.9
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 4.4e-99 365.9 457 44.2
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 4.1e-97 359.4 331 58.0
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 2.5e-94 350.1 445 44.7
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 2.5e-94 350.1 449 45.4
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 8.8e-92 341.7 345 54.8
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 1.0e-87 328.2 465 39.8
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 2.9e-87 326.6 456 42.5
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 4.4e-83 312.8 382 48.7
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 4.8e-82 309.3 459 44.2
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 2.7e-80 303.5 228 62.7
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 5.9e-72 275.8 302 51.3
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 7.8e-72 275.4 234 59.8
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 5.0e-71 272.7 247 60.3
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 2.9e-66 256.9 257 49.0
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 8.0e-61 238.8 164 70.7
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 4.3e-54 216.5 168 64.3
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 1.3e-42 178.3 159 64.2
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 6.0e-40 169.5 119 70.6
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 3.3e-38 163.7 123 62.6
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 5.3e-36 156.4 129 60.5
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 1.7e-34 151.4 128 63.3
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 9.3e-33 145.6 120 63.3
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 2.9e-26 124.0 102 61.8
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 3.2e-25 120.6 431 27.4
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 4.0e-20 103.6 110 50.0
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 4.6e-16 90.1 103 49.5
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 2.5e-14 84.3 52 78.8
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 9.6e-14 82.4 57 77.2
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 3.8e-10 70.5 56 60.7


User provided reference genes

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