Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 2.6e-162 575.9 421 100.0
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 2.7e-82 310.1 380 57.4
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 2.3e-70 270.4 328 59.1
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 3.5e-50 203.4 354 42.7
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 1.3e-49 201.4 246 53.7
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 1.7e-49 201.1 301 46.5
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 1.5e-48 198.0 262 48.9
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 4.3e-48 196.4 395 38.7
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 3.6e-47 193.4 269 47.2
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 2.4e-43 180.6 268 45.9
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 3.2e-43 180.3 368 38.6
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 9.2e-43 178.7 415 35.4
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 2.1e-42 177.6 354 38.7
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 2.1e-42 177.6 260 44.2
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 2.7e-42 177.2 381 39.1
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 5.1e-41 172.9 392 37.0
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 6.6e-41 172.6 414 35.0
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 1.9e-40 171.0 361 37.7
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 3.3e-40 170.2 276 42.0
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 9.6e-40 168.7 398 37.7
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 1.2e-39 168.3 293 42.0
CAN.G206.210 Capsicum annuum HOM05D005710 ORTHO05D004657 1.6e-39 167.9 336 39.6
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 2.1e-39 167.5 380 36.3
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 6.2e-39 166.0 253 45.8
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.1e-38 165.2 378 36.0
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 1.4e-38 164.9 235 46.8
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 1.4e-38 164.9 370 40.3
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 2.4e-38 164.1 381 36.7
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 2.4e-38 164.1 325 40.6
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 3.1e-38 163.7 361 36.3
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 6.9e-38 162.5 413 34.6
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 2.0e-37 161.0 331 41.1
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 5.8e-37 159.5 390 36.7
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 1.3e-36 158.3 251 46.6
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 2.2e-36 157.5 235 45.5
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 2.2e-36 157.5 312 37.5
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 6.4e-36 156.0 289 40.1
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 6.4e-36 156.0 275 42.2
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 8.4e-36 155.6 256 44.1
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 7.1e-35 152.5 345 36.8
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 1.2e-34 151.8 257 39.7
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.6e-34 151.4 261 42.9
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.6e-34 151.4 261 42.9
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 2.1e-34 151.0 322 36.3
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 2.1e-34 151.0 317 38.8
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 3.5e-34 150.2 175 53.1
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 1.0e-33 148.7 251 43.0
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 1.3e-33 148.3 352 35.8
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 1.7e-33 147.9 253 42.7
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 3.0e-33 147.1 299 36.5
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 3.9e-33 146.7 293 38.6
SGA_v2.0_scaffold4G02406 Striga asiatica HOM05D005710 ORTHO05D004657 3.9e-33 146.7 257 38.9
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 5.1e-33 146.4 257 39.7
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 1.1e-32 145.2 263 39.2
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 1.9e-32 144.4 274 40.1
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 5.6e-32 142.9 264 39.8
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 1.3e-31 141.7 264 39.4
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 1.3e-31 141.7 250 41.6
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 1.6e-31 141.4 280 38.6
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 2.1e-31 141.0 267 37.1
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 4.8e-31 139.8 265 38.5
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 8.1e-31 139.0 296 34.8
Hma1.2p1_1813F.1_g303710 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 8.1e-31 139.0 249 43.0
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 1.4e-30 138.3 266 38.0
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 5.3e-30 136.3 299 37.1
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 9.0e-30 135.6 391 31.7
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 4.5e-29 133.3 250 38.8
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 5.8e-29 132.9 293 37.2
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 2.9e-28 130.6 226 41.6
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 2.9e-28 130.6 286 36.4
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 3.8e-28 130.2 356 33.1
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 3.8e-28 130.2 356 33.1
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 3.8e-28 130.2 262 36.6
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 8.4e-28 129.0 223 39.5
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 2.4e-27 127.5 177 49.2
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 3.2e-27 127.1 287 36.2
Peaxi162Scf00166g00643 Petunia axillaris HOM05D005710 ORTHO05D004657 7.1e-27 125.9 352 36.9
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 1.2e-26 125.2 380 30.8
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 1.6e-26 124.8 261 37.2
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 2.7e-26 124.0 256 38.3
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 3.5e-26 123.6 260 36.5
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 3.5e-26 123.6 226 38.5
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 3.5e-26 123.6 226 38.5
Haze_14462 Corylus avellana HOM05D005710 ORTHO05D004657 3.5e-26 123.6 289 39.8
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 4.6e-26 123.2 273 35.9
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 4.6e-26 123.2 273 35.9
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 3.0e-25 120.6 244 40.6
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 3.9e-25 120.2 266 35.0
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 3.9e-25 120.2 226 38.1
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 6.7e-25 119.4 264 35.2
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 4.3e-24 116.7 261 35.2
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 1.6e-23 114.8 195 43.6
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 2.1e-23 114.4 253 35.2
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 2.1e-23 114.4 221 39.4
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 2.8e-23 114.0 263 35.4
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 2.8e-23 114.0 263 35.4
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 2.4e-22 110.9 235 37.4
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 2.4e-22 110.9 241 38.2
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 2.4e-22 110.9 213 36.2
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 3.1e-22 110.5 263 35.4
Haze_14452 Corylus avellana HOM05D005710 ORTHO05D004657 4.0e-22 110.2 298 34.6
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 5.3e-22 109.8 257 34.6
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 1.2e-21 108.6 291 33.7
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 5.8e-21 106.3 149 43.6
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 7.6e-21 105.9 128 47.7
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 1.1e-19 102.1 166 41.6
Manes.02G052100 Manihot esculenta HOM05D005710 ORTHO05D004657 1.4e-19 101.7 361 31.6
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 7.1e-19 99.4 113 50.4
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 1.2e-18 98.6 167 41.9
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 8.7e-17 92.4 106 49.1
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 2.5e-16 90.9 90 48.9
HPP92_019480 Vanilla planifolia HOM05D005710 ORTHO05D004657 1.4e-14 85.1 182 33.5
Migut.K01288 Erythranthe guttata HOM05D005710 ORTHO05D004657 4.0e-14 83.6 164 37.2
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 1.7e-12 78.2 139 36.0
CAN.G206.216 Capsicum annuum HOM05D005710 ORTHO05D004657 2.7e-10 70.9 173 34.1
SalBow3G1747 Salvia bowleyana HOM05D005710 ORTHO05D004657 1.0e-09 68.9 149 32.2
Oeu033388.1 Olea europaea HOM05D005710 ORTHO05D004657 2.3e-09 67.8 128 38.3
BcaC06g33686 Brassica carinata HOM05D005710 ORTHO05D004657 3.0e-09 67.4 203 31.5
Oeu000861.1 Olea europaea HOM05D005710 ORTHO05D004657 3.9e-09 67.0 138 35.5
COL.COLO4_06360 Corchorus olitorius HOM05D006269 ORTHO05D001487 2.5e-08 64.3 121 30.6
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.5e-08 64.3 107 35.5
Eucgr.D02334 Eucalyptus grandis HOM05D006269 ORTHO05D001487 3.3e-08 63.9 190 28.9
Nn4g23370 Nelumbo nucifera HOM05D005710 ORTHO05D004657 4.3e-08 63.5 257 26.8
FAN10G2074 Fragaria x ananassa HOM05D006269 ORTHO05D001487 7.4e-08 62.8 172 29.1
FAN10G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 7.4e-08 62.8 172 29.1
Pp3c19_17670 Physcomitrium patens HOM05D006269 ORTHO05D001487 2.8e-07 60.8 116 34.5
PGR031G2857 Punica granatum HOM05D006269 ORTHO05D001487 2.8e-07 60.8 108 32.4
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.8e-07 60.8 109 33.9
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 3.7e-07 60.5 115 33.9
Cc02_g38780 Coffea canephora HOM05D006269 ORTHO05D001487 8.2e-07 59.3 111 40.5
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 8.2e-07 59.3 114 32.5
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 8.2e-07 59.3 122 33.6
GSVIVG01011503001 Vitis vinifera HOM05D005710 ORTHO05D004657 8.2e-07 59.3 61 45.9
FAN03G1935 Fragaria x ananassa HOM05D006269 ORTHO05D001487 1.1e-06 58.9 180 29.4
Pp3c7_10910 Physcomitrium patens HOM05D002157 ORTHO05D002197 1.1e-06 58.9 105 31.4
Carub.0004s2894 Capsella rubella HOM05D006269 ORTHO05D001487 1.8e-06 58.2 143 30.8
Thhalv10001302m.g Eutrema salsugineum HOM05D006269 ORTHO05D001487 2.4e-06 57.8 103 35.9
FvH4_7g15690 Fragaria vesca HOM05D006269 ORTHO05D001487 2.4e-06 57.8 172 26.2
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.4e-06 57.8 107 33.6
Actinidia10090 Actinidia chinensis HOM05D006269 ORTHO05D001487 3.1e-06 57.4 109 33.9
A05p01560 Brassica napus HOM05D006269 ORTHO05D001487 3.1e-06 57.4 117 35.0
Nitab4.5_0013021g0030 Nicotiana tabacum HOM05D006269 ORTHO05D001487 3.1e-06 57.4 105 33.3
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 4.1e-06 57.0 99 35.4
GSVIVG01027028001 Vitis vinifera HOM05D006269 ORTHO05D001487 4.1e-06 57.0 174 28.7
AagrBONN_evm.TU.Sc2ySwM_228.5492 Anthoceros agrestis HOM05D006269 ORTHO05D001487 5.3e-06 56.6 122 27.0
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 5.3e-06 56.6 115 32.2
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 5.3e-06 56.6 117 33.3
FAN06G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 5.3e-06 56.6 172 26.2
Potri.002G166300 Populus trichocarpa HOM05D006269 ORTHO05D001487 5.3e-06 56.6 103 37.9
RcHm_v2.0_Chr1g0358421 Rosa chinensis HOM05D006269 ORTHO05D001487 5.3e-06 56.6 130 33.8
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 6.9e-06 56.2 99 33.3
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 6.9e-06 56.2 115 32.2
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 6.9e-06 56.2 115 32.2
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 6.9e-06 56.2 115 32.2
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 6.9e-06 56.2 115 32.2
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 6.9e-06 56.2 99 36.4
SEGI_15116 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 6.9e-06 56.2 103 33.0
PGSC0003DMG400000079 Solanum tuberosum HOM05D006269 ORTHO05D001487 6.9e-06 56.2 108 35.2
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 6.9e-06 56.2 100 38.0
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 9.0e-06 55.8 119 43.7


User provided reference genes

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