Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 2.6e-272 941.4 460 100.0
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 5.0e-252 874.0 477 91.0
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 8.7e-212 740.3 467 76.7
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.2e-191 672.5 453 71.3
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.5e-190 669.1 442 72.2
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 4.2e-190 668.3 462 68.8
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 2.7e-189 665.6 468 69.4
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.8e-188 662.9 460 69.6
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 1.5e-187 659.8 447 72.0
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.6e-187 659.1 463 69.3
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 2.6e-187 659.1 454 70.5
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.6e-187 659.1 448 70.3
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 7.4e-187 657.5 438 72.4
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 9.7e-187 657.1 446 72.4
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 9.7e-187 657.1 448 70.5
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 1.3e-186 656.8 470 67.9
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.3e-186 656.8 447 70.0
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.7e-186 656.4 451 69.0
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.1e-185 653.7 447 68.2
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.1e-185 653.7 449 69.0
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.4e-185 653.3 448 70.5
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 2.4e-185 652.5 448 69.6
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.0e-184 649.4 463 67.4
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 4.5e-184 648.3 446 68.4
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 4.5e-184 648.3 438 71.5
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 5.9e-184 647.9 449 69.0
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 7.7e-184 647.5 446 69.3
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 1.3e-183 646.7 463 67.0
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 2.2e-183 646.0 460 67.0
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 2.2e-183 646.0 443 69.5
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.2e-183 646.0 451 70.1
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.2e-183 646.0 451 69.8
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 2.2e-183 646.0 451 68.3
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 5.0e-183 644.8 452 69.0
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 5.0e-183 644.8 462 66.9
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 8.5e-183 644.0 449 68.4
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.1e-182 643.7 443 69.8
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.4e-182 643.3 467 67.5
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 1.9e-182 642.9 462 68.4
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.9e-182 642.9 465 65.6
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 2.5e-182 642.5 457 68.3
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 3.2e-182 642.1 466 66.5
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 5.5e-182 641.3 467 66.2
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 7.2e-182 641.0 450 68.4
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 7.2e-182 641.0 466 66.7
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 9.4e-182 640.6 448 68.8
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 1.2e-181 640.2 465 65.6
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.2e-181 640.2 449 69.3
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.2e-181 640.2 449 69.3
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.6e-181 639.8 444 68.9
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.1e-181 639.4 438 69.6
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.1e-181 639.4 466 66.1
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.1e-181 639.4 466 66.1
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.7e-181 639.0 464 67.2
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 2.7e-181 639.0 482 64.9
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.6e-181 638.6 466 64.8
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 6.1e-181 637.9 448 68.5
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 6.1e-181 637.9 449 67.9
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 6.1e-181 637.9 449 69.3
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 7.9e-181 637.5 434 71.2
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 7.9e-181 637.5 459 67.5
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.0e-180 637.1 443 68.4
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 1.4e-180 636.7 452 67.3
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 1.4e-180 636.7 433 71.6
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 1.4e-180 636.7 473 66.8
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.3e-180 636.0 449 68.8
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.3e-180 636.0 449 68.8
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 3.0e-180 635.6 449 67.7
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 3.9e-180 635.2 443 68.2
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 3.9e-180 635.2 444 68.9
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 5.2e-180 634.8 447 68.0
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 8.8e-180 634.0 448 67.4
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 7.4e-179 630.9 461 67.0
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 9.7e-179 630.6 442 68.1
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.2e-178 629.4 439 68.6
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 3.7e-178 628.6 457 66.1
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.7e-178 628.6 449 68.4
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 6.3e-178 627.9 450 67.3
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 6.3e-178 627.9 454 66.1
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 8.2e-178 627.5 431 67.3
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 8.2e-178 627.5 454 65.6
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 1.4e-177 626.7 444 68.5
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.4e-177 625.9 444 67.3
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 3.1e-177 625.5 431 68.9
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 3.1e-177 625.5 433 68.6
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 9.1e-177 624.0 435 69.2
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.2e-176 623.6 468 63.5
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 2.6e-176 622.5 385 77.7
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.0e-175 620.5 447 66.7
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 3.8e-175 618.6 468 65.0
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 5.0e-175 618.2 469 64.8
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 8.5e-175 617.5 453 66.9
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 1.1e-174 617.1 443 66.1
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.1e-174 617.1 453 65.8
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.6e-173 613.2 453 64.9
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 2.1e-173 612.8 447 65.8
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 2.7e-173 612.5 462 64.9
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 2.7e-173 612.5 451 66.5
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 3.6e-173 612.1 442 65.8
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 5.2e-172 608.2 458 66.2
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 6.7e-172 607.8 452 65.9
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 2.0e-171 606.3 434 66.8
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 2.0e-171 606.3 454 63.9
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 2.6e-171 605.9 434 66.4
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 3.3e-171 605.5 455 64.8
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 7.5e-171 604.4 440 67.7
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 7.5e-171 604.4 433 65.6
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.3e-170 603.6 434 66.1
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 1.3e-170 603.6 475 62.1
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.8e-170 602.4 456 63.4
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 6.3e-170 601.3 428 66.1
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 1.1e-169 600.5 428 65.9
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.4e-169 600.1 452 65.0
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 1.8e-169 599.7 449 65.3
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 4.1e-169 598.6 428 65.9
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 5.3e-169 598.2 451 63.6
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 5.3e-169 598.2 451 63.6
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 5.3e-169 598.2 455 64.2
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 1.6e-168 596.7 437 66.6
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 2.0e-168 596.3 451 64.1
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 2.9e-167 592.4 434 65.0
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.1e-166 590.5 406 70.7
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 1.1e-166 590.5 454 64.3
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 2.5e-166 589.3 406 70.7
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 9.4e-166 587.4 428 65.4
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 2.7e-165 585.9 455 61.5
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.4e-164 583.6 465 61.1
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.8e-164 583.2 407 69.3
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.8e-164 583.2 450 64.4
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.3e-164 582.8 455 61.1
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 3.0e-164 582.4 454 63.4
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.1e-161 573.9 421 65.8
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 1.1e-161 573.9 431 64.0
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.7e-159 566.6 456 61.0
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.7e-157 559.3 461 61.2
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 2.8e-154 549.3 369 71.8
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 9.2e-153 544.3 385 67.0
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.7e-152 542.7 454 60.6
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 2.5e-150 536.2 454 58.1
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 9.8e-147 524.2 377 66.3
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 9.2e-145 517.7 375 66.1
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 2.7e-144 516.2 369 66.9
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 3.1e-140 502.7 387 64.3
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.4e-137 493.8 447 57.5
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.2e-133 480.7 427 57.4
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 8.9e-132 474.6 447 54.6
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.2e-131 474.2 439 55.8
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.2e-129 466.1 441 54.0
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.4e-124 450.7 435 52.9
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 7.3e-118 428.3 437 50.8
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 8.9e-116 421.4 306 64.1
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 8.7e-103 378.3 287 62.7
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 3.7e-101 372.9 236 72.9
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.8e-100 370.5 439 45.8
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 2.9e-98 363.2 231 73.6
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.6e-93 347.4 436 43.8
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 6.9e-92 342.0 443 40.4
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.2e-89 333.2 277 59.6
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 9.0e-84 315.1 382 42.7
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.2e-67 261.5 271 52.8
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 1.8e-63 247.7 157 72.0
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 9.1e-44 182.2 113 70.8
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 1.7e-42 177.9 153 62.7
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.2e-35 155.2 93 76.3
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 4.5e-35 153.3 424 29.0
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 7.3e-33 146.0 139 54.0
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 4.0e-31 140.2 433 27.5
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 3.1e-23 114.0 84 61.9
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.1e-20 105.5 72 65.3
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 2.2e-13 81.3 64 56.2
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 2.3e-10 71.2 57 61.4
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 4.7e-08 63.5 181 27.1
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 4.0e-07 60.5 43 65.1
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 8.9e-07 59.3 43 62.8


User provided reference genes

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