Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 5.1e-268 927.2 470 100.0
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 2.4e-193 679.1 484 75.0
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 1.2e-179 633.6 443 74.9
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 8.0e-136 488.0 465 57.6
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 2.3e-135 486.5 459 57.7
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 5.2e-135 485.3 283 82.0
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 8.8e-135 484.6 457 57.5
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.5e-134 483.8 451 56.5
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 4.1e-132 475.7 436 57.6
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.7e-130 470.3 456 56.8
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 2.9e-130 469.5 451 56.1
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 1.1e-129 467.6 465 55.9
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 7.2e-129 464.9 437 56.1
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 7.2e-129 464.9 458 56.8
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 2.1e-128 463.4 453 55.2
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 4.7e-128 462.2 489 54.4
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 4.7e-128 462.2 503 54.1
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 6.1e-128 461.8 471 55.4
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 1.8e-127 460.3 440 56.6
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 5.2e-127 458.8 480 53.1
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 8.8e-127 458.0 491 52.5
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 2.0e-126 456.8 444 56.8
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 4.4e-126 455.7 505 51.9
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 7.5e-126 454.9 452 56.2
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 7.5e-126 454.9 451 56.1
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 1.7e-125 453.8 441 57.4
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 2.8e-125 453.0 499 52.7
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 2.4e-124 449.9 444 56.1
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 7.0e-124 448.4 440 56.6
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 7.0e-124 448.4 463 55.3
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.6e-123 447.2 447 56.2
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 1.6e-123 447.2 493 49.5
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 2.0e-123 446.8 441 56.2
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 4.5e-123 445.7 555 47.4
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 4.5e-123 445.7 500 53.0
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 5.9e-123 445.3 456 55.0
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 5.9e-123 445.3 452 55.1
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 2.2e-122 443.4 494 52.2
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 2.9e-122 443.0 472 54.9
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 2.9e-122 443.0 481 54.3
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 5.0e-122 442.2 448 56.2
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 6.5e-122 441.8 500 51.4
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.1e-121 441.0 456 54.6
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 4.2e-121 439.1 472 53.6
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 7.2e-121 438.3 484 52.3
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 9.4e-121 438.0 481 53.4
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.6e-120 437.2 467 53.1
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 2.1e-120 436.8 487 50.5
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 3.6e-120 436.0 530 49.4
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 6.1e-120 435.3 449 55.0
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 8.0e-120 434.9 458 53.9
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 8.0e-120 434.9 436 55.0
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.8e-119 433.7 449 55.5
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 5.2e-119 432.2 440 55.5
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 1.5e-118 430.6 453 52.8
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 2.0e-118 430.3 449 54.8
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 2.0e-118 430.3 493 51.9
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 4.4e-118 429.1 444 53.4
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 4.4e-118 429.1 451 54.8
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 5.7e-118 428.7 477 51.4
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 5.7e-118 428.7 440 54.3
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 1.3e-117 427.6 460 53.3
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 1.3e-117 427.6 465 53.8
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 2.8e-117 426.4 458 53.3
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 4.8e-117 425.6 449 54.3
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 6.3e-117 425.2 450 52.9
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 6.3e-117 425.2 455 53.4
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 1.1e-116 424.5 537 47.5
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.8e-116 423.7 446 53.1
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.6e-115 420.6 445 51.7
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 2.7e-115 419.9 457 51.4
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.3e-114 416.8 446 52.2
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 2.5e-113 413.3 458 50.7
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 4.2e-113 412.5 523 45.1
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 1.6e-112 410.6 456 50.7
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.6e-112 410.6 439 51.7
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 1.6e-112 410.6 458 50.2
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 2.8e-112 409.8 471 50.1
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 5.2e-111 405.6 445 48.8
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 6.8e-111 405.2 496 48.2
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 1.5e-110 404.1 466 48.7
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.0e-110 403.7 526 46.0
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 1.7e-109 400.6 438 52.3
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 3.7e-109 399.4 450 49.8
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 9.2e-108 394.8 408 52.7
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 6.6e-106 388.7 311 59.5
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 1.5e-105 387.5 280 64.3
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.6e-102 376.7 458 45.6
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 7.5e-102 375.2 274 62.4
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.1e-100 371.3 325 56.3
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 3.5e-99 366.3 264 65.5
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 3.9e-98 362.8 291 60.1
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 3.9e-98 362.8 268 62.3
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 8.6e-98 361.7 265 62.6
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 4.0e-95 352.8 270 62.6
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 1.2e-94 351.3 561 43.0
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 2.6e-94 350.1 431 48.3
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 4.1e-92 342.8 267 62.2
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 3.5e-91 339.7 271 57.9
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 5.6e-89 332.4 280 57.5
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 5.6e-89 332.4 511 41.1
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 7.3e-89 332.0 262 59.5
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 6.2e-88 328.9 270 54.8
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 6.2e-88 328.9 234 67.5
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.3e-87 327.0 270 58.1
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 2.0e-86 323.9 272 58.5
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 2.6e-86 323.6 266 57.9
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 1.9e-81 307.4 245 60.0
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.8e-79 300.8 279 54.8
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 7.6e-78 295.4 197 71.1
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 9.9e-78 295.0 283 51.6
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.1e-73 281.6 268 52.2
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.8e-71 274.2 265 53.2
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.5e-70 271.2 268 51.9
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 7.8e-67 258.8 188 65.4
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.0e-66 258.5 173 67.6
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.3e-58 230.7 218 52.3
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.5e-54 218.0 269 46.1
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 2.3e-50 204.1 270 40.4
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.9e-49 201.1 269 43.1
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 5.3e-47 193.0 134 66.4
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 2.2e-45 187.6 174 54.6
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 2.2e-45 187.6 229 50.7
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 6.1e-43 179.5 283 37.1
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 2.3e-42 177.6 294 37.8
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 9.7e-41 172.2 256 41.0
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 1.6e-40 171.4 133 63.9
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 5.3e-39 166.4 103 70.9
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 2.6e-38 164.1 136 58.1
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 1.7e-37 161.4 271 42.1
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 5.5e-36 156.4 303 34.0
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 9.4e-36 155.6 248 41.5
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 7.7e-30 136.0 152 46.7
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 5.5e-28 129.8 334 30.5
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 1.4e-26 125.2 96 59.4
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 6.7e-26 122.9 265 36.2
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 2.6e-25 120.9 117 50.4
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 5.7e-25 119.8 75 74.7
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 3.7e-24 117.1 301 30.2
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.6e-14 84.3 160 43.1
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.1e-12 79.0 54 61.1
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 4.2e-12 77.0 137 47.4
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 9.4e-12 75.9 67 55.2
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 3.6e-11 73.9 130 39.2
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 8.0e-11 72.8 85 41.2
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 6.8e-10 69.7 61 60.7
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 5.4e-07 60.1 102 32.4


User provided reference genes

Program Settings