Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 0.0e+00 2085.1 1157 100.0
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 0.0e+00 1196.4 1223 60.5
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 8.4e-288 994.2 1187 54.5
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 5.6e-207 725.7 1435 40.3
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 1.3e-200 704.5 1285 41.1
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 2.1e-198 697.2 1247 41.0
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 2.1e-198 697.2 1288 40.9
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 6.2e-198 695.7 1283 41.2
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 5.2e-197 692.6 1352 39.8
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 1.5e-196 691.0 1374 39.5
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 4.4e-196 689.5 1329 39.7
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 2.4e-194 683.7 1265 40.4
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 9.2e-194 681.8 1353 39.5
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 1.9e-191 674.1 1294 41.5
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 9.6e-191 671.8 1208 41.8
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 1.6e-190 671.0 1289 42.0
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 2.8e-190 670.2 1299 40.6
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 6.2e-190 669.1 1309 40.0
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 6.9e-189 665.6 1262 40.7
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 2.0e-188 664.1 1339 39.1
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 5.8e-188 662.5 1349 39.0
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 1.3e-187 661.4 1381 40.0
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 1.7e-187 661.0 1292 41.0
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 6.4e-187 659.1 1257 39.4
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.1e-186 658.3 1291 41.5
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 2.4e-186 657.1 1340 38.0
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 1.2e-185 654.8 1259 39.6
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 3.5e-185 653.3 1294 38.9
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 3.5e-185 653.3 1376 38.7
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 1.7e-184 651.0 1340 37.8
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 3.9e-184 649.8 1316 39.7
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 1.5e-183 647.9 1204 40.5
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 2.5e-183 647.1 1193 39.9
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 2.5e-183 647.1 1330 39.1
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 2.5e-183 647.1 1377 38.4
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 5.6e-183 646.0 1218 39.5
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 3.6e-182 643.3 1440 38.0
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 4.5e-180 636.3 1209 41.1
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 7.6e-180 635.6 1345 36.7
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 1.7e-179 634.4 1338 38.1
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 2.2e-179 634.0 1232 40.3
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 2.9e-179 633.6 1243 40.5
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.4e-178 631.3 1317 38.2
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 1.4e-178 631.3 1371 37.2
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 3.9e-176 623.2 1247 40.3
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 4.3e-175 619.8 1276 39.1
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.3e-174 618.2 1315 38.9
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.3e-174 618.2 1175 39.7
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 2.1e-174 617.5 1267 38.0
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 6.2e-174 615.9 1260 38.9
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 8.1e-174 615.5 1262 38.5
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.4e-173 614.8 1319 37.8
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 1.4e-173 614.8 1280 37.8
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 5.3e-173 612.8 1317 37.8
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 6.9e-173 612.5 1218 40.7
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 2.9e-171 607.1 1193 38.7
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 8.4e-171 605.5 1283 38.4
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 5.5e-170 602.8 1275 37.6
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 9.3e-170 602.1 1210 39.7
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 3.5e-169 600.1 1259 38.0
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 7.9e-169 599.0 1249 40.6
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.0e-168 597.0 1198 38.8
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 3.3e-167 593.6 1147 39.1
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 7.4e-167 592.4 1244 37.7
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 2.1e-166 590.9 1234 39.3
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 3.7e-166 590.1 1165 39.1
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 4.8e-166 589.7 1329 36.9
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.0e-165 585.5 1235 38.0
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 5.8e-164 582.8 1207 38.1
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 2.9e-163 580.5 1210 38.0
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 2.7e-161 573.9 1421 36.9
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 1.3e-160 571.6 1188 38.7
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 2.8e-158 563.9 1188 37.5
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 2.6e-156 557.4 1263 37.2
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 3.6e-153 547.0 1119 38.8
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 4.6e-153 546.6 1206 37.9
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 5.7e-151 539.7 1181 39.4
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.5e-148 531.6 920 41.7
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 2.9e-147 527.3 1158 37.0
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.6e-145 521.5 1236 35.8
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 6.1e-145 519.6 1122 36.7
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.0e-144 518.8 1122 36.6
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 2.3e-144 517.7 1174 36.8
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 2.0e-143 514.6 1128 36.8
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 2.0e-143 514.6 1128 36.8
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 3.1e-141 507.3 1131 37.4
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 4.5e-140 503.4 1235 35.5
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 5.9e-140 503.1 1226 36.3
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 8.5e-139 499.2 1068 37.4
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 7.4e-135 486.1 1297 34.6
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.4e-133 481.1 1297 34.5
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 5.3e-133 479.9 1319 34.0
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.3e-133 479.9 1103 37.4
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 7.0e-133 479.6 1202 35.3
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 3.6e-129 467.2 1237 34.2
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.0e-128 464.2 856 39.4
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 4.4e-127 460.3 1266 36.2
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 1.0e-123 449.1 1190 34.9
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.8e-117 428.3 579 46.6
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.1e-117 427.6 822 39.5
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 6.4e-102 376.7 573 45.0
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.7e-99 368.6 909 33.6
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.5e-98 365.5 854 34.7
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.3e-98 364.4 1190 32.9
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 2.3e-88 331.6 670 42.8
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 5.2e-88 330.5 470 46.0
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 2.4e-85 321.6 393 48.1
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 7.1e-85 320.1 420 44.8
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 7.8e-84 316.6 606 41.3
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 2.8e-81 308.1 614 38.4
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 3.8e-78 297.7 669 36.5
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 9.9e-71 273.1 458 39.5
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 2.5e-66 258.5 292 50.0
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 5.3e-64 250.8 622 35.4
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 1.3e-57 229.6 358 46.6
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.5e-55 222.6 269 48.0
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 5.1e-51 207.6 460 33.9
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 8.7e-51 206.8 657 30.9
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 8.4e-46 190.3 466 31.8
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 7.1e-45 187.2 162 58.0
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.1e-40 173.3 565 26.7
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 1.4e-37 162.9 256 38.3
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 1.2e-36 159.8 494 33.6
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 1.0e-35 156.8 429 30.8
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 6.7e-35 154.1 476 32.4
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 2.2e-33 149.1 228 40.4
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.4e-31 141.7 325 35.4
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 5.0e-30 137.9 444 30.9
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 3.2e-29 135.2 346 33.5
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.7e-25 121.7 248 34.7
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 2.4e-24 119.0 388 31.2
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 3.1e-24 118.6 534 28.7
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 1.8e-19 102.8 387 26.1
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 7.0e-16 90.9 231 40.3
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.5e-13 83.2 243 38.7
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.5e-13 82.4 120 43.3
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.5e-13 82.4 67 56.7
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 4.2e-13 81.6 164 34.1
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.6e-12 79.7 52 63.5
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.6e-12 78.6 100 62.0
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 5.3e-08 64.7 513 25.9
SHI02204 Sapria himalayana HOM05D002890 ORTHO05D005855 1.7e-06 59.7 168 31.0


User provided reference genes

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