Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 4.2e-92 341.3 164 100.0
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 4.3e-36 155.2 141 60.3
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 1.6e-35 153.3 144 54.9
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 2.1e-35 152.9 141 55.3
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 3.1e-34 149.1 166 50.6
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 7.0e-31 137.9 165 43.6
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 3.5e-30 135.6 134 54.5
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 3.5e-30 135.6 148 49.3
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 3.9e-29 132.1 138 48.6
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 3.9e-29 132.1 138 48.6
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 3.9e-29 132.1 177 42.9
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 6.6e-29 131.3 133 51.9
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.5e-28 130.2 128 53.1
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.9e-28 129.8 133 47.4
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 3.3e-28 129.0 139 51.1
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 7.3e-28 127.9 132 48.5
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 9.5e-28 127.5 141 48.2
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.6e-27 126.7 173 42.8
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 2.1e-27 126.3 141 51.8
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 3.6e-27 125.6 148 45.9
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 4.7e-27 125.2 167 42.5
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 6.2e-27 124.8 136 47.1
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 8.1e-27 124.4 133 48.1
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 8.1e-27 124.4 147 45.6
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.1e-26 124.0 143 49.0
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 1.4e-26 123.6 177 39.5
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.8e-26 123.2 141 46.1
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.8e-26 123.2 140 46.4
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 1.8e-26 123.2 138 44.2
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 4.0e-26 122.1 125 48.0
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 4.0e-26 122.1 136 43.4
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 4.0e-26 122.1 140 47.9
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 6.8e-26 121.3 138 47.8
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 8.9e-26 120.9 145 45.5
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 8.9e-26 120.9 172 41.9
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 8.9e-26 120.9 134 48.5
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 1.2e-25 120.6 142 46.5
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 1.2e-25 120.6 130 44.6
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.5e-25 120.2 154 41.6
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.5e-25 120.2 145 44.1
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.6e-25 119.4 137 46.7
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 2.6e-25 119.4 140 47.1
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 4.4e-25 118.6 162 42.0
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 4.4e-25 118.6 135 43.7
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 4.4e-25 118.6 147 43.5
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 5.8e-25 118.2 141 46.1
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 7.5e-25 117.9 140 42.9
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.3e-24 117.1 144 46.5
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.7e-24 116.7 141 43.3
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.7e-24 116.7 142 42.3
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 2.2e-24 116.3 143 46.2
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 2.2e-24 116.3 136 44.9
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 2.2e-24 116.3 171 40.4
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 2.2e-24 116.3 128 50.0
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.2e-24 116.3 153 43.8
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 2.2e-24 116.3 129 50.4
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.9e-24 115.9 150 44.0
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 3.7e-24 115.5 157 43.9
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 3.7e-24 115.5 157 43.9
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.7e-24 115.5 130 50.0
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 4.9e-24 115.2 133 47.4
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 6.4e-24 114.8 128 46.9
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 6.4e-24 114.8 166 41.0
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 6.4e-24 114.8 130 45.4
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 8.3e-24 114.4 144 44.4
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.1e-23 114.0 166 40.4
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 1.1e-23 114.0 141 42.6
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.4e-23 113.6 202 37.6
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.4e-23 112.8 149 45.0
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 2.4e-23 112.8 142 40.8
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 2.4e-23 112.8 133 44.4
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 2.4e-23 112.8 133 44.4
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.4e-23 112.8 131 47.3
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 3.2e-23 112.5 155 43.9
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 3.2e-23 112.5 179 39.1
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 4.1e-23 112.1 141 42.6
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 4.1e-23 112.1 151 42.4
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 4.1e-23 112.1 151 42.4
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 4.1e-23 112.1 130 44.6
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 5.4e-23 111.7 141 41.8
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 5.4e-23 111.7 175 38.9
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 5.4e-23 111.7 156 41.7
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 5.4e-23 111.7 142 40.1
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 7.1e-23 111.3 137 43.8
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 7.1e-23 111.3 155 45.2
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 9.2e-23 110.9 159 41.5
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 9.2e-23 110.9 163 40.5
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 1.2e-22 110.5 133 45.9
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.2e-22 110.5 163 41.1
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.2e-22 110.5 144 42.4
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 1.6e-22 110.2 138 43.5
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-22 110.2 129 45.0
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 1.6e-22 110.2 139 44.6
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.1e-22 109.8 158 40.5
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.7e-22 109.4 150 43.3
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 2.7e-22 109.4 150 42.0
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 3.5e-22 109.0 140 41.4
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 3.5e-22 109.0 133 42.9
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 4.6e-22 108.6 157 40.8
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 4.6e-22 108.6 130 48.5
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 6.0e-22 108.2 156 41.7
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 6.0e-22 108.2 156 41.7
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 6.0e-22 108.2 127 41.7
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 6.0e-22 108.2 145 40.0
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 7.8e-22 107.8 134 47.0
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 7.8e-22 107.8 150 42.7
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 7.8e-22 107.8 154 37.0
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 1.0e-21 107.5 159 41.5
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-21 107.1 148 41.9
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 1.3e-21 107.1 140 42.9
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 1.3e-21 107.1 140 42.9
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.3e-21 107.1 136 40.4
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.3e-21 107.1 136 40.4
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.7e-21 106.7 138 44.2
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.7e-21 106.7 142 43.7
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.7e-21 106.7 179 38.5
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 1.7e-21 106.7 154 39.6
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 1.7e-21 106.7 141 45.4
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 2.3e-21 106.3 140 42.1
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 2.3e-21 106.3 140 42.1
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 2.3e-21 106.3 151 43.0
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 2.3e-21 106.3 141 44.7
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 3.0e-21 105.9 135 42.2
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 5.1e-21 105.1 164 42.1
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 5.1e-21 105.1 125 44.0
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 5.1e-21 105.1 141 42.6
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 5.1e-21 105.1 141 41.8
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 6.6e-21 104.8 153 42.5
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 6.6e-21 104.8 150 42.7
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 8.6e-21 104.4 124 43.5
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 8.6e-21 104.4 124 43.5
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.1e-20 104.0 124 45.2
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.5e-20 103.6 141 43.3
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.9e-20 103.2 125 44.0
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.9e-20 103.2 125 42.4
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.9e-20 103.2 135 42.2
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 2.5e-20 102.8 131 44.3
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.5e-20 102.8 154 40.3
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 3.3e-20 102.4 157 41.4
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 3.3e-20 102.4 129 45.7
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.3e-20 102.4 124 42.7
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 3.3e-20 102.4 133 38.3
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 4.3e-20 102.1 125 43.2
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 4.3e-20 102.1 125 42.4
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 5.6e-20 101.7 130 44.6
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 7.3e-20 101.3 153 41.8
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 7.3e-20 101.3 146 40.4
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 7.3e-20 101.3 139 41.7
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 7.3e-20 101.3 132 43.9
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 9.5e-20 100.9 124 42.7
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 9.5e-20 100.9 124 42.7
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 9.5e-20 100.9 124 42.7
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 9.5e-20 100.9 172 36.0
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-19 100.1 124 44.4
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 1.6e-19 100.1 124 44.4
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 3.6e-19 99.0 157 40.8
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 4.7e-19 98.6 136 40.4
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 6.2e-19 98.2 157 39.5
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 1.1e-18 97.4 157 39.5
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 1.8e-18 96.7 124 43.5
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.8e-18 96.7 132 42.4
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 3.1e-18 95.9 143 36.4
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 5.2e-18 95.1 125 42.4
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 5.2e-18 95.1 136 41.9
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 8.9e-18 94.4 130 42.3
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 8.9e-18 94.4 130 42.3
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 8.9e-18 94.4 130 42.3
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 8.9e-18 94.4 136 39.7
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 8.9e-18 94.4 150 37.3
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-17 94.0 124 40.3
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 2.2e-16 89.7 152 36.8
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 2.9e-16 89.4 115 42.6
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.9e-16 89.4 93 52.7
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.4e-15 87.0 146 37.7
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 3.5e-14 82.4 93 47.3
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 2.3e-13 79.7 157 35.0
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 3.1e-10 69.3 77 46.8
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 4.4e-09 65.5 90 41.1
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 2.1e-06 56.6 95 36.8


User provided reference genes

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