Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 0.0e+00 1097.4 572 100.0
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 6.7e-246 854.0 638 76.6
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 9.1e-227 790.4 614 74.6
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 4.1e-219 765.0 669 68.2
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.0e-218 762.7 669 68.2
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 3.5e-218 761.9 664 67.6
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 7.2e-216 754.2 654 68.3
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 4.9e-212 741.5 674 64.2
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 7.0e-211 737.6 651 67.3
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 7.0e-211 737.6 651 67.3
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.6e-210 736.5 668 64.5
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 2.9e-209 732.3 566 73.5
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 3.3e-208 728.8 671 65.6
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 3.3e-208 728.8 660 67.4
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 7.3e-208 727.6 660 64.7
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.2e-207 726.9 695 62.3
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.0e-206 723.8 619 68.3
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.0e-206 723.8 619 68.7
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.3e-206 722.6 662 64.4
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.1e-206 722.2 651 65.1
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 8.9e-206 720.7 657 63.8
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 2.0e-205 719.5 615 67.6
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 2.6e-205 719.2 658 64.6
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 9.8e-205 717.2 656 64.9
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 1.3e-204 716.8 657 64.7
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 1.3e-204 716.8 674 63.8
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 3.7e-204 715.3 645 66.4
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 6.4e-204 714.5 656 64.6
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 8.3e-204 714.1 660 64.7
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 3.2e-203 712.2 653 65.2
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 4.1e-203 711.8 629 66.1
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 7.0e-203 711.1 652 65.0
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 1.6e-202 709.9 529 75.2
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.6e-202 708.4 629 65.5
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 7.8e-202 707.6 693 61.6
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.0e-201 707.2 641 65.4
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.3e-201 706.8 649 64.4
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 2.3e-201 706.1 657 63.8
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.3e-201 706.1 637 64.8
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 5.0e-201 704.9 601 67.1
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 5.0e-201 704.9 661 64.1
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 4.3e-200 701.8 663 63.2
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 7.3e-200 701.0 618 67.2
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 9.5e-200 700.7 608 66.6
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.6e-199 699.9 657 63.5
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 8.0e-199 697.6 617 66.0
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.1e-198 697.2 661 62.9
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 1.2e-197 693.7 625 65.8
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 3.4e-197 692.2 772 58.0
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 4.4e-197 691.8 663 62.4
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 4.4e-197 691.8 580 69.0
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 5.8e-197 691.4 649 63.9
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 5.8e-197 691.4 658 63.7
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.7e-196 689.9 625 65.1
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 4.9e-196 688.3 642 64.3
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 4.9e-196 688.3 655 62.1
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 8.3e-196 687.6 506 76.3
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 1.9e-195 686.4 602 66.3
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 7.0e-195 684.5 609 65.4
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 9.2e-195 684.1 606 66.0
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 1.6e-194 683.3 567 68.3
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.6e-194 681.8 616 64.6
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 1.0e-193 680.6 609 65.8
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.3e-193 680.2 611 65.1
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.3e-193 680.2 611 65.1
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.7e-193 679.9 558 70.1
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 6.6e-193 677.9 603 65.2
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 6.6e-193 677.9 603 65.2
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 6.6e-193 677.9 603 65.2
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 1.1e-192 677.2 562 68.3
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 4.3e-192 675.2 614 64.5
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 4.3e-192 675.2 614 64.5
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 4.7e-191 671.8 724 58.0
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.2e-191 671.4 713 59.3
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.2e-189 667.2 632 63.9
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.6e-189 666.0 649 61.0
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 5.8e-189 664.8 654 62.7
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 9.9e-189 664.1 673 58.8
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 1.4e-187 660.2 617 64.0
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 5.4e-187 658.3 553 69.4
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 3.9e-185 652.1 668 59.0
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 4.0e-182 642.1 668 58.5
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 5.4e-179 631.7 495 73.3
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.7e-178 629.4 627 60.8
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 4.6e-178 628.6 691 57.6
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 2.5e-176 622.9 598 63.0
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 7.3e-176 621.3 659 57.1
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 8.1e-175 617.8 569 64.5
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 3.2e-171 605.9 433 79.0
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 4.2e-171 605.5 633 58.8
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 2.3e-169 599.7 525 66.1
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 1.8e-166 590.1 649 55.9
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.4e-165 585.9 558 60.4
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 2.4e-163 579.7 640 54.7
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 3.9e-161 572.4 550 62.2
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 2.1e-159 566.6 654 53.8
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 1.5e-157 560.5 450 68.9
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 1.3e-156 557.4 653 53.0
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.0e-153 547.7 616 55.7
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 6.7e-153 545.0 598 59.0
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.8e-151 538.9 558 58.1
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 2.7e-146 523.1 586 52.9
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 9.7e-144 514.6 691 52.1
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.7e-143 512.7 657 50.5
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.9e-132 476.5 402 70.6
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 6.1e-130 468.8 420 65.0
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 5.0e-124 449.1 626 47.0
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.8e-121 440.7 580 49.3
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 3.3e-120 436.4 526 48.5
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 8.5e-116 421.8 707 43.4
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 2.6e-112 410.2 507 53.5
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 6.3e-111 405.6 546 46.5
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 1.1e-107 394.8 517 48.9
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 4.5e-101 372.9 641 42.9
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 4.7e-98 362.8 546 44.3
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 3.1e-89 333.6 307 69.7
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 3.7e-79 300.1 281 66.2
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 4.7e-74 283.1 264 70.5
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 6.8e-73 279.3 179 91.1
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.0e-72 277.7 303 54.5
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 2.9e-63 247.3 271 51.7
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 1.3e-60 238.4 170 84.1
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.2e-56 225.3 292 45.9
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.9e-54 218.0 274 54.4
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.3e-51 207.2 188 72.9
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.6e-45 188.3 157 68.8
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 8.1e-42 176.0 101 94.1
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 1.2e-37 162.2 204 57.8
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.1e-37 161.4 268 44.0
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.3e-36 158.7 290 36.9
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.3e-36 158.7 148 59.5
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 6.2e-34 149.8 83 83.1
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.5e-24 118.6 89 77.5
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.2e-23 114.8 160 43.8
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 4.6e-21 107.1 309 28.5
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 9.7e-19 99.4 59 78.0
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 5.9e-16 90.1 51 86.3
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 3.8e-15 87.4 63 68.3
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.5e-14 84.7 154 40.9
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 5.7e-11 73.6 79 48.1
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 5.7e-11 73.6 79 48.1
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 7.4e-11 73.2 172 33.1
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 8.2e-10 69.7 53 58.5
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 5.9e-08 63.5 53 58.5
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 8.5e-07 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.1e-06 59.3 32 90.6
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 1.9e-06 58.5 34 88.2
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 1.9e-06 58.5 35 71.4
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 5.5e-06 57.0 55 58.2
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 5.5e-06 57.0 55 58.2


User provided reference genes

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