Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.9e-101 372.5 188 100.0
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 4.1e-99 364.8 187 97.3
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 9.1e-91 337.0 187 87.7
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 7.7e-90 334.0 185 88.6
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.5e-88 328.9 187 85.0
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.3e-86 322.4 185 83.8
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 7.2e-80 300.8 185 78.9
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.4e-75 286.6 185 75.1
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.7e-73 279.6 184 72.8
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 8.5e-73 277.3 184 74.5
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.2e-72 275.4 185 71.9
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 3.6e-71 271.9 185 72.4
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 1.4e-70 270.0 188 72.3
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 4.4e-69 265.0 187 67.9
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 5.7e-69 264.6 186 70.4
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 1.3e-68 263.5 187 68.4
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 1.7e-68 263.1 187 68.4
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 2.2e-68 262.7 187 68.4
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 2.2e-68 262.7 187 68.4
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 1.2e-66 256.9 183 67.8
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 1.3e-65 253.4 186 68.3
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.7e-65 253.1 184 67.9
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.7e-65 253.1 184 69.0
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 8.6e-65 250.8 186 66.7
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 1.5e-64 250.0 183 66.7
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 7.2e-64 247.7 187 65.2
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.6e-63 246.5 183 65.6
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 4.7e-63 245.0 184 66.3
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 8.0e-63 244.2 185 63.2
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 8.0e-63 244.2 187 65.8
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 1.4e-62 243.4 182 64.8
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 1.4e-62 243.4 182 65.4
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 2.3e-62 242.7 186 63.4
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 2.3e-62 242.7 182 63.7
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 2.3e-62 242.7 182 64.8
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 3.0e-62 242.3 184 65.2
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 3.0e-62 242.3 184 64.7
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 5.2e-62 241.5 182 63.2
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 6.8e-62 241.1 184 66.8
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 6.8e-62 241.1 182 65.9
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 6.8e-62 241.1 183 66.7
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 8.8e-62 240.7 184 64.1
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 8.8e-62 240.7 182 63.7
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 8.8e-62 240.7 182 63.7
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 8.8e-62 240.7 182 64.3
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 8.8e-62 240.7 182 67.6
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 8.8e-62 240.7 183 63.9
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.2e-61 240.4 184 64.1
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 1.2e-61 240.4 182 65.4
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 1.5e-61 240.0 182 63.2
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 1.5e-61 240.0 182 63.2
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 1.5e-61 240.0 184 64.7
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.5e-61 240.0 183 65.6
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 3.4e-61 238.8 186 62.4
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.4e-61 238.8 183 65.0
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 4.4e-61 238.4 187 65.8
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 7.5e-61 237.7 184 66.3
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 7.5e-61 237.7 182 63.2
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 7.5e-61 237.7 182 63.2
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 7.5e-61 237.7 182 63.7
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 1.7e-60 236.5 182 62.6
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.7e-60 236.5 182 62.6
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.2e-60 236.1 182 63.7
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.2e-60 236.1 182 64.3
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.2e-60 236.1 182 64.3
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 2.2e-60 236.1 182 64.3
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 2.8e-60 235.7 182 63.2
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 3.7e-60 235.3 189 63.0
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 4.9e-60 235.0 184 63.6
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 4.9e-60 235.0 185 62.2
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 8.3e-60 234.2 182 62.1
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 8.3e-60 234.2 182 64.3
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.1e-59 233.8 184 64.1
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.1e-59 233.8 184 63.0
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 1.4e-59 233.4 182 61.0
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 1.4e-59 233.4 182 63.2
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.8e-59 233.0 182 63.7
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 1.8e-59 233.0 182 62.6
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 5.4e-59 231.5 182 61.0
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 5.4e-59 231.5 182 64.3
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 7.0e-59 231.1 184 61.4
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 2.7e-58 229.2 182 62.1
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 4.5e-58 228.4 182 62.1
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 4.5e-58 228.4 169 63.9
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 1.0e-57 227.3 182 61.5
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 5.0e-57 224.9 183 61.7
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 6.6e-57 224.6 182 61.5
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.5e-56 223.4 182 60.4
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 1.9e-56 223.0 183 60.7
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 1.9e-56 223.0 182 61.5
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 4.3e-56 221.9 180 61.7
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 5.6e-56 221.5 182 61.5
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 9.5e-56 220.7 182 61.5
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 1.2e-55 220.3 183 60.1
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.2e-55 220.3 178 62.9
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.2e-55 220.3 150 71.3
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 2.8e-55 219.2 183 60.1
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 6.1e-55 218.0 182 61.0
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 5.2e-54 214.9 168 65.5
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 5.2e-54 214.9 184 58.2
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 5.2e-54 214.9 184 58.2
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 8.9e-54 214.2 148 69.6
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.2e-53 213.8 185 56.8
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 1.3e-52 210.3 184 57.1
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 1.7e-52 209.9 184 57.1
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 2.2e-52 209.5 184 59.8
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 2.2e-52 209.5 204 55.4
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.4e-51 206.8 185 58.4
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 4.1e-51 205.3 204 54.9
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 4.1e-51 205.3 184 56.5
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 5.4e-51 204.9 149 69.1
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.6e-50 203.4 167 60.5
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 1.7e-49 199.9 165 60.6
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.1e-48 197.2 165 60.6
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 3.3e-48 195.7 187 50.8
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 7.5e-45 184.5 147 59.9
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 4.1e-43 178.7 196 52.6
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 4.1e-43 178.7 182 48.9
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.2e-42 177.2 183 52.5
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 7.3e-40 167.9 185 47.0
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 2.1e-39 166.4 183 46.4
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 3.6e-39 165.6 183 51.9
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 5.2e-38 161.8 183 46.4
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 9.9e-37 157.5 161 53.4
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.3e-36 157.1 183 44.8
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 9.2e-35 151.0 147 53.7
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 2.7e-34 149.4 185 40.0
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.6e-29 132.9 112 56.2
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 5.8e-29 131.7 100 63.0
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.8e-28 129.0 99 65.7
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 8.4e-28 127.9 65 92.3
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 1.1e-27 127.5 72 80.6
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.2e-23 114.0 119 52.1
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 8.1e-23 111.3 158 41.1
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.6e-21 106.3 104 50.0
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.9e-19 100.1 80 61.2
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 5.4e-19 98.6 167 32.9
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 5.1e-17 92.0 72 58.3
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 3.3e-16 89.4 188 31.4
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 7.3e-16 88.2 80 60.0
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.1e-14 84.3 174 29.9


User provided reference genes

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