Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 3.1e-292 1007.7 486 100.0
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 5.2e-223 777.7 475 79.6
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 7.6e-190 667.5 476 72.7
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 2.1e-184 649.4 487 68.0
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 3.6e-184 648.7 490 67.6
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 6.9e-183 644.4 482 67.0
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 1.5e-182 643.3 498 66.7
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 3.4e-182 642.1 476 68.9
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.4e-180 636.7 501 65.3
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 2.4e-180 636.0 492 67.1
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 7.1e-180 634.4 482 66.8
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 1.6e-179 633.3 493 66.7
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 1.6e-179 633.3 480 68.5
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.6e-179 633.3 485 64.9
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 2.7e-179 632.5 484 65.3
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 2.7e-179 632.5 483 67.3
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 3.5e-179 632.1 483 67.1
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 6.0e-179 631.3 491 66.0
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 6.0e-179 631.3 473 67.4
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.0e-178 630.6 475 68.4
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 2.3e-178 629.4 486 66.7
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 3.0e-178 629.0 484 66.1
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 3.0e-178 629.0 488 66.0
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 3.9e-178 628.6 475 68.4
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 3.3e-177 625.5 496 65.5
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 5.6e-177 624.8 500 63.4
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 2.8e-176 622.5 492 65.2
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 2.8e-176 622.5 489 65.2
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 3.6e-176 622.1 489 64.4
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 4.8e-176 621.7 460 70.2
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 8.1e-176 620.9 489 66.1
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.1e-175 620.5 489 65.2
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 1.1e-175 620.5 485 66.4
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.1e-175 620.5 469 66.7
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.4e-175 620.2 470 66.2
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 4.0e-175 618.6 487 64.5
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 5.3e-175 618.2 484 65.7
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 4.5e-174 615.1 497 63.8
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 4.5e-174 615.1 475 67.6
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 5.8e-174 614.8 481 66.3
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.3e-173 613.6 486 64.8
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 1.7e-173 613.2 508 62.6
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 1.7e-173 613.2 485 65.4
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 6.4e-173 611.3 486 65.2
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.9e-172 609.8 489 63.8
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 1.6e-171 606.7 483 64.6
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 3.5e-171 605.5 468 65.8
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 3.5e-171 605.5 474 66.0
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 7.9e-171 604.4 478 64.4
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.0e-170 604.0 447 69.4
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 1.3e-170 603.6 494 63.6
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 6.7e-170 601.3 473 64.9
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 1.3e-168 597.0 473 64.7
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 6.2e-168 594.7 482 64.7
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.4e-167 593.6 479 64.3
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 5.3e-167 591.7 483 63.6
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.5e-166 590.1 468 63.9
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 5.8e-166 588.2 471 63.7
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 8.4e-165 584.3 478 64.2
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 2.5e-164 582.8 469 63.3
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 4.2e-164 582.0 472 63.8
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 4.2e-164 582.0 472 63.8
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 1.6e-163 580.1 477 62.3
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.1e-163 579.7 465 64.3
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 2.1e-163 579.7 477 63.7
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 3.5e-163 578.9 468 63.2
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 4.6e-163 578.6 470 63.2
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.1e-161 573.9 491 63.1
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 3.3e-161 572.4 466 62.9
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 5.7e-161 571.6 481 62.0
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 1.3e-160 570.5 484 63.2
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 4.1e-159 565.5 481 61.1
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.5e-158 562.0 490 60.6
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 1.0e-157 560.8 523 57.4
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 2.2e-157 559.7 475 62.1
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.1e-156 557.4 469 61.6
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 5.5e-156 555.1 493 61.5
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 1.9e-153 546.6 477 61.2
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 7.4e-153 544.7 472 61.0
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 3.7e-152 542.3 474 61.8
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 1.8e-151 540.0 467 61.7
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 4.1e-151 538.9 473 59.6
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 1.0e-149 534.3 475 57.7
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 8.5e-149 531.2 470 61.5
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 2.3e-146 523.1 465 60.2
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 2.3e-146 523.1 546 52.2
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.0e-141 507.7 497 56.9
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 1.1e-137 494.2 470 56.6
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 7.4e-137 491.5 511 54.2
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 1.7e-136 490.3 498 55.0
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 2.2e-136 490.0 505 52.9
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 5.3e-135 485.3 407 63.6
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 2.0e-134 483.4 469 56.5
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 2.0e-134 483.4 460 54.8
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 5.0e-133 478.8 401 62.3
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 1.1e-132 477.6 266 82.7
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.9e-132 476.9 382 65.4
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 2.7e-131 473.0 401 62.8
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.2e-129 467.6 448 58.9
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 5.9e-126 455.3 497 53.5
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 7.7e-126 454.9 477 55.6
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 8.5e-125 451.4 545 47.9
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 1.5e-124 450.7 265 80.4
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 9.4e-124 448.0 514 49.4
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 1.6e-123 447.2 370 63.5
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 6.5e-117 425.2 844 35.5
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 3.1e-111 406.4 451 51.9
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 1.0e-106 391.3 407 54.1
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 1.5e-97 360.9 347 59.1
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 4.9e-96 355.9 480 45.4
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-93 347.8 628 36.9
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 3.9e-93 346.3 228 69.7
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.1e-92 344.7 427 51.1
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 1.5e-92 344.4 477 45.7
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 6.8e-90 335.5 385 52.7
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 6.4e-80 302.4 337 51.3
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 1.9e-79 300.8 481 38.3
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 7.8e-78 295.4 465 38.3
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.8e-75 287.0 190 68.9
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 3.2e-63 246.9 281 45.6
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 8.7e-61 238.8 130 82.3
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 4.0e-58 229.9 131 77.9
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 2.0e-57 227.6 299 41.1
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.1e-55 221.9 401 40.1
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 6.0e-54 216.1 326 38.0
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 2.8e-51 207.2 113 85.0
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.5e-44 184.9 105 84.8
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 3.7e-35 153.7 87 82.8
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 2.0e-25 121.3 76 75.0
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 3.9e-21 107.1 81 64.2
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 1.5e-20 105.1 60 76.7
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 1.1e-15 89.0 51 82.4
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 1.6e-14 85.1 69 52.2
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 1.4e-13 82.0 59 64.4
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 1.8e-13 81.6 41 87.8
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 2.7e-09 67.8 94 41.5
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 3.5e-09 67.4 49 63.3
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 2.9e-08 64.3 73 46.6
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 6.5e-08 63.2 43 69.8


User provided reference genes

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