Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1760.7 863 100.0
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1485.3 868 85.1
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1449.9 873 83.2
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1444.9 869 83.0
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1198.3 865 70.4
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1191.4 867 70.2
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1183.3 860 70.5
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1179.9 868 69.8
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1164.4 862 69.0
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1153.3 866 69.1
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1151.7 869 68.6
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1147.5 864 68.5
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1140.9 863 68.1
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1139.8 865 67.6
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1139.4 869 67.2
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1137.9 881 67.2
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1135.2 867 67.9
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1133.2 867 68.2
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1130.9 850 68.6
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1126.7 901 65.0
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1126.3 888 66.8
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1126.3 901 64.9
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1125.9 894 66.1
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1124.8 901 64.8
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1124.8 870 67.0
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1124.4 897 65.1
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1123.6 866 67.1
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1118.6 866 67.1
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1117.8 861 67.5
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1116.3 864 67.1
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1113.6 831 68.5
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1111.3 866 66.6
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1110.5 905 64.1
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1109.0 862 67.3
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1107.8 866 66.9
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1106.7 883 66.0
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1105.9 883 65.1
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1105.5 866 66.7
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1104.4 867 66.9
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1104.4 871 65.7
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1103.6 906 63.5
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1103.6 895 64.8
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1102.0 866 65.9
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1100.1 882 65.0
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1099.0 895 64.6
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1096.6 906 63.7
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1095.5 873 64.7
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1094.0 868 65.6
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1093.6 873 64.8
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1093.2 859 66.8
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1092.8 866 65.4
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1091.6 866 66.5
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1090.9 897 64.2
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1089.7 858 65.4
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1088.9 866 65.4
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1088.2 861 65.7
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1087.8 872 65.3
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1086.6 890 64.5
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1086.6 862 65.1
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1085.9 863 65.2
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1084.7 895 63.8
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1084.7 863 66.5
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1084.3 899 63.4
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1083.9 894 63.5
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1082.0 883 64.3
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1081.6 894 63.5
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1079.3 879 64.1
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1076.6 853 65.4
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1076.2 871 65.4
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1076.2 867 64.4
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1075.1 893 63.3
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 8.9e-311 1070.1 863 64.5
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.5e-310 1069.3 919 61.9
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 2.6e-310 1068.5 918 62.0
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 5.8e-310 1067.4 868 65.3
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 1.7e-309 1065.8 898 62.8
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 2.9e-309 1065.1 865 64.6
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 3.8e-309 1064.7 863 64.2
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 8.4e-309 1063.5 867 64.4
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 1.4e-308 1062.8 882 63.5
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 1.2e-307 1059.7 866 64.0
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 6.0e-307 1057.4 871 64.4
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 1.5e-305 1052.7 887 63.1
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 9.6e-305 1050.0 882 62.9
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 9.6e-305 1050.0 935 59.4
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 3.7e-304 1048.1 863 64.0
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 3.7e-304 1048.1 868 64.5
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 6.9e-303 1043.9 879 62.5
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 9.0e-303 1043.5 869 62.8
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 7.6e-302 1040.4 889 62.3
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 1.0e-301 1040.0 869 62.7
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 8.4e-301 1036.9 869 64.0
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 1.6e-299 1032.7 873 62.1
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 3.0e-298 1028.5 861 63.0
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 8.7e-298 1026.9 882 62.6
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 3.3e-297 1025.0 861 62.8
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 4.3e-297 1024.6 856 63.9
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 4.3e-297 1024.6 836 65.1
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 7.4e-297 1023.8 859 63.4
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 7.4e-297 1023.8 863 62.6
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 7.4e-297 1023.8 745 70.1
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 3.7e-296 1021.5 876 61.9
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 6.3e-296 1020.8 875 63.0
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 8.2e-296 1020.4 881 60.8
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 1.8e-295 1019.2 881 61.7
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 2.4e-295 1018.8 887 62.0
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 3.4e-294 1015.0 874 62.6
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.9e-292 1009.2 878 61.4
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 4.2e-292 1008.1 894 61.3
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 9.4e-292 1006.9 852 62.9
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 1.8e-290 1002.7 864 61.7
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 5.1e-290 1001.1 787 65.6
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 2.0e-289 999.2 866 61.1
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 9.7e-289 996.9 862 62.5
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 1.8e-287 992.6 788 65.2
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 3.0e-282 975.3 869 61.0
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.0e-281 972.6 867 60.7
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 1.3e-280 969.9 950 55.9
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 2.4e-279 965.7 761 64.9
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 2.4e-279 965.7 822 61.8
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 3.1e-279 965.3 866 60.7
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 4.7e-275 951.4 867 59.5
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 7.4e-273 944.1 823 62.7
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 1.0e-269 933.7 953 55.3
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.2e-267 926.8 646 72.3
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 3.1e-263 912.1 588 76.5
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 5.3e-263 911.4 879 57.5
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 5.9e-262 907.9 899 56.3
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.0e-258 895.2 903 55.3
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 2.8e-256 889.0 827 56.7
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.4e-255 885.9 883 54.9
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 9.1e-255 884.0 903 54.5
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.3e-240 837.0 811 55.6
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 6.4e-240 834.7 819 55.8
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 6.6e-237 824.7 865 52.4
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.8e-235 819.3 894 52.8
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 5.8e-233 811.6 790 54.9
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 1.1e-231 807.4 841 53.4
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.4e-231 807.0 809 52.9
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 6.6e-229 798.1 802 54.0
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.3e-224 783.9 611 64.5
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 3.8e-208 729.2 839 47.3
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 8.4e-208 728.0 858 47.0
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 1.7e-205 720.3 574 61.0
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.3e-197 694.1 856 45.3
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 9.3e-191 671.4 577 63.1
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.7e-184 650.6 613 52.4
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 5.0e-176 622.5 603 55.9
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 2.0e-172 610.5 603 54.7
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 4.5e-169 599.4 883 41.8
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 2.0e-164 583.9 559 56.2
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 4.9e-139 499.6 645 43.3
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.0e-133 481.9 509 52.5
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 6.4e-131 472.6 431 58.7
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 2.7e-113 414.1 604 36.9
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.5e-108 398.3 499 45.9
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 6.0e-105 386.3 478 49.0
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 1.5e-103 381.7 401 54.4
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 1.8e-93 348.2 700 32.6
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.1e-90 339.0 264 63.3
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 3.2e-82 310.8 219 67.1
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.4e-77 295.4 264 58.0
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 5.5e-66 256.9 175 69.1
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 1.5e-63 248.8 520 28.8
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 4.1e-61 240.7 504 31.0
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.5e-58 231.5 158 70.9
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 4.8e-30 137.5 180 46.1
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 3.5e-20 104.8 70 70.0
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 3.5e-20 104.8 212 35.8
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 2.3e-19 102.1 74 68.9
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 5.0e-19 100.9 78 62.8
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 8.9e-16 90.1 118 46.6
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 2.3e-11 75.5 69 55.1


User provided reference genes

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