Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0466771 Helianthus annuus HOM05D006941 ORTHO05D008361 1.7e-70 269.2 137 100.0
HanXRQChr05g0154771 Helianthus annuus HOM05D006941 ORTHO05D008361 1.0e-22 110.5 137 49.6
ECA233G1626 Erigeron canadensis HOM05D006941 ORTHO05D008361 2.7e-20 102.4 137 47.4
Oeu029280.1 Olea europaea HOM05D006941 ORTHO05D008361 2.0e-18 96.3 137 44.5
Gorai.005G056700 Gossypium raimondii HOM05D006941 ORTHO05D008361 9.7e-18 94.0 137 44.5
Eucgr.H03704 Eucalyptus grandis HOM05D006941 ORTHO05D008361 2.8e-17 92.4 137 43.1
Gohir.A02G045400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 2.8e-17 92.4 137 43.8
Gohir.D02G051400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 2.8e-17 92.4 137 43.8
PGR004G2827 Punica granatum HOM05D006941 ORTHO05D008361 2.8e-17 92.4 137 43.8
Prupe.1G143700 Prunus persica HOM05D006941 ORTHO05D008361 3.7e-17 92.0 137 43.1
Lj5g0014316 Lotus japonicus HOM05D006941 ORTHO05D008361 4.8e-17 91.7 137 43.1
SGA_v2.0_scaffold57G20266 Striga asiatica HOM05D006941 ORTHO05D008361 4.8e-17 91.7 137 46.0
CiPaw.02G087700 Carya illinoinensis HOM05D006941 ORTHO05D008361 6.3e-17 91.3 137 42.3
Solyc01g067820.3 Solanum lycopersicum HOM05D006941 ORTHO05D008361 6.3e-17 91.3 137 42.3
PGSC0003DMG400022846 Solanum tuberosum HOM05D006941 ORTHO05D008361 6.3e-17 91.3 137 42.3
Phvul.007G158300 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 8.3e-17 90.9 137 41.6
Oeu010965.1 Olea europaea HOM05D006941 ORTHO05D008361 1.1e-16 90.5 137 42.3
VMungo0464G0431 Vigna mungo HOM05D006941 ORTHO05D008361 1.1e-16 90.5 140 47.9
ClCG06G005480 Citrullus lanatus HOM05D006941 ORTHO05D008361 1.4e-16 90.1 132 45.5
Eucgr.H03682 Eucalyptus grandis HOM05D006941 ORTHO05D008361 1.4e-16 90.1 137 42.3
Duzib151G0434 Durio zibethinus HOM05D006941 ORTHO05D008361 1.8e-16 89.7 134 43.3
Sopen01g029770 Solanum pennellii HOM05D006941 ORTHO05D008361 1.8e-16 89.7 137 41.6
arahy.Tifrunner.gnm1.ann1.DDI179 Arachis hypogaea HOM05D006941 ORTHO05D008361 2.4e-16 89.4 137 43.1
Lalb_Chr22g0358511 Lupinus albus HOM05D006941 ORTHO05D008361 2.4e-16 89.4 137 41.6
Phvul.010G109000 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 2.4e-16 89.4 137 41.6
Phvul.L002281 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 2.4e-16 89.4 137 41.6
QL06p006942 Quercus lobata HOM05D006941 ORTHO05D008361 2.4e-16 89.4 136 41.9
Lalb_Chr14g0364951 Lupinus albus HOM05D006941 ORTHO05D008361 3.1e-16 89.0 137 41.6
Nitab4.5_0001624g0050 Nicotiana tabacum HOM05D006941 ORTHO05D008361 3.1e-16 89.0 137 41.6
CSS0029112 Camellia sinensis var. sinensis HOM05D006941 ORTHO05D008361 4.1e-16 88.6 137 40.9
Glyma.10G044600 Glycine max HOM05D006941 ORTHO05D008361 5.3e-16 88.2 137 41.6
Glyma.13G132200 Glycine max HOM05D006941 ORTHO05D008361 5.3e-16 88.2 137 41.6
Ca_09608_v3 Cicer arietinum L. HOM05D006941 ORTHO05D008361 7.0e-16 87.8 137 40.1
FAN22G2172 Fragaria x ananassa HOM05D006941 ORTHO05D008361 7.0e-16 87.8 137 41.6
Actinidia32379 Actinidia chinensis HOM05D006941 ORTHO05D008361 9.1e-16 87.4 134 41.8
FvH4_4g16990 Fragaria vesca HOM05D006941 ORTHO05D008361 9.1e-16 87.4 137 41.6
FAN07G2315 Fragaria x ananassa HOM05D006941 ORTHO05D008361 9.1e-16 87.4 137 41.6
FAN12G1403 Fragaria x ananassa HOM05D006941 ORTHO05D008361 9.1e-16 87.4 137 41.6
FAN12G3786 Fragaria x ananassa HOM05D006941 ORTHO05D008361 9.1e-16 87.4 137 41.6
Manes.03G190000 Manihot esculenta HOM05D006941 ORTHO05D008361 9.1e-16 87.4 137 42.3
RcHm_v2.0_Chr4g0420661 Rosa chinensis HOM05D006941 ORTHO05D008361 9.1e-16 87.4 137 41.6
Thecc.04G275300 Theobroma cacao HOM05D006941 ORTHO05D008361 9.1e-16 87.4 137 42.3
Manes.14G117300 Manihot esculenta HOM05D006941 ORTHO05D008361 1.2e-15 87.0 137 43.1
TWI09G0325 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 1.6e-15 86.7 137 40.9
FAN17G2868 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.0e-15 86.3 137 40.9
Peaxi162Scf01067g00024 Petunia axillaris HOM05D006941 ORTHO05D008361 2.0e-15 86.3 134 41.0
Carub.0005s2918 Capsella rubella HOM05D006941 ORTHO05D008361 2.7e-15 85.9 133 40.6
Thhalv10006352m.g Eutrema salsugineum HOM05D006941 ORTHO05D008361 2.7e-15 85.9 133 41.4
arahy.Tifrunner.gnm1.ann1.UB09PE Arachis hypogaea HOM05D006941 ORTHO05D008361 4.5e-15 85.1 136 40.4
CARHR172790 Cardamine hirsuta HOM05D006941 ORTHO05D008361 4.5e-15 85.1 134 38.8
Psat6g067840 Pisum sativum HOM05D006941 ORTHO05D008361 4.5e-15 85.1 137 38.7
Potri.005G071700 Populus trichocarpa HOM05D006941 ORTHO05D008361 4.5e-15 85.1 134 41.0
CAN.G1327.4 Capsicum annuum HOM05D006941 ORTHO05D008361 5.9e-15 84.7 134 40.3
DCAR_030574 Daucus carota HOM05D006941 ORTHO05D008361 7.7e-15 84.3 137 39.4
Sp5g00970 Schrenkiella parvula HOM05D006941 ORTHO05D008361 7.7e-15 84.3 133 40.6
TWI53G0190 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 7.7e-15 84.3 136 40.4
vmacro15274 Vaccinium macrocarpon HOM05D006941 ORTHO05D008361 7.7e-15 84.3 137 41.6
CANSAT78G0092 Cannabis sativa HOM05D006941 ORTHO05D008361 1.3e-14 83.6 137 40.1
EL10As5g23584 Beta vulgaris HOM05D006941 ORTHO05D008361 1.7e-14 83.2 134 40.3
BcaC07g42761 Brassica carinata HOM05D006941 ORTHO05D008361 1.7e-14 83.2 133 39.8
A09p54410 Brassica napus HOM05D006941 ORTHO05D008361 1.7e-14 83.2 133 39.1
C08p37290 Brassica napus HOM05D006941 ORTHO05D008361 1.7e-14 83.2 133 39.8
BolC8t51307H Brassica oleracea HOM05D006941 ORTHO05D008361 1.7e-14 83.2 133 39.8
BraA09t40854Z Brassica rapa HOM05D006941 ORTHO05D008361 1.7e-14 83.2 133 39.1
Migut.G00223 Erythranthe guttata HOM05D006941 ORTHO05D008361 1.7e-14 83.2 129 41.1
Sabra07G0080600 Salix brachista HOM05D006941 ORTHO05D008361 2.2e-14 82.8 135 42.2
Atru.chr4.2738 Acer truncatum HOM05D006941 ORTHO05D008361 2.9e-14 82.4 137 39.4
Sed0004518 Sechium edule HOM05D006941 ORTHO05D008361 3.8e-14 82.0 131 41.2
unitig_22.g6332 Utricularia gibba HOM05D006941 ORTHO05D008361 3.8e-14 82.0 138 40.6
Lj4g0022805 Lotus japonicus HOM05D006941 ORTHO05D008361 6.5e-14 81.3 137 40.1
Sabra05G0058700 Salix brachista HOM05D006941 ORTHO05D008361 6.5e-14 81.3 166 38.0
Medtr1g068580 Medicago truncatula HOM05D006941 ORTHO05D008361 1.1e-13 80.5 128 39.8
Rhsim02G0014500 Rhododendron simsii HOM05D006941 ORTHO05D008361 1.5e-13 80.1 137 40.9
AL5G45260 Arabidopsis lyrata HOM05D006941 ORTHO05D008361 1.9e-13 79.7 133 38.3
Haze_01039 Corylus avellana HOM05D006941 ORTHO05D008361 1.9e-13 79.7 47 85.1
Hund22020 Selenicereus undatus HOM05D006941 ORTHO05D008361 1.9e-13 79.7 134 38.8
SalBow1G8344 Salvia bowleyana HOM05D006941 ORTHO05D008361 2.5e-13 79.3 137 38.7
AT3G62450 Arabidopsis thaliana HOM05D006941 ORTHO05D008361 5.5e-13 78.2 133 37.6
Medtr2g005070 Medicago truncatula HOM05D006941 ORTHO05D008361 7.2e-13 77.8 127 39.4
Aa31LG10G16360 Aethionema arabicum HOM05D006941 ORTHO05D008361 1.2e-12 77.0 130 37.7
Os11g0107450 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 2.1e-12 76.3 129 39.5
THA.LOC104820449 Tarenaya hassleriana HOM05D006941 ORTHO05D008361 2.1e-12 76.3 136 36.0
Cfa015511 Carpinus fangiana HOM05D006941 ORTHO05D008361 4.7e-12 75.1 44 81.8
Lsat_1_v5_gn_2_28060 Lactuca sativa HOM05D006941 ORTHO05D008361 4.7e-12 75.1 63 66.7
COL.COLO4_13955 Corchorus olitorius HOM05D006941 ORTHO05D008361 1.0e-11 73.9 43 86.0
PSO302G0016 Papaver somniferum HOM05D006941 ORTHO05D008361 1.4e-11 73.6 134 37.3
BcaB02g07336 Brassica carinata HOM05D006941 ORTHO05D008361 5.2e-11 71.6 124 38.7
Os12g0106550 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 6.8e-11 71.2 134 35.8
Eucgr.H03709 Eucalyptus grandis HOM05D006941 ORTHO05D008361 2.6e-10 69.3 41 82.9
SHI00325 Sapria himalayana HOM05D006941 ORTHO05D008361 2.6e-10 69.3 129 34.9
MD16G1176900 Malus domestica HOM05D006941 ORTHO05D008361 4.4e-10 68.6 41 85.4
Ciclev10006724m.g Citrus clementina HOM05D006941 ORTHO05D008361 7.5e-10 67.8 41 80.5
vmacro16859 Vaccinium macrocarpon HOM05D000537 ORTHO05D000415 7.5e-10 67.8 38 84.2
BcaC07g40728 Brassica carinata HOM05D006941 ORTHO05D008361 1.7e-09 66.6 47 72.3
Eucgr.H03675 Eucalyptus grandis HOM05D006941 ORTHO05D008361 1.7e-09 66.6 40 77.5
SGA_v2.0_scaffold114G31931 Striga asiatica HOM05D006941 ORTHO05D008361 1.7e-09 66.6 41 75.6
HanXRQChr10g0285751 Helianthus annuus HOM05D006941 ORTHO05D008361 3.7e-09 65.5 35 85.7
VMungo0720G2266 Vigna mungo HOM05D006941 ORTHO05D008361 1.4e-08 63.5 41 78.0
Sc19g0004830 Simmondsia chinensis HOM05D006941 ORTHO05D008361 4.1e-08 62.0 38 78.9
Zm00001eb163280 Zea mays HOM05D006941 ORTHO05D008361 4.1e-08 62.0 33 87.9
SEGI_10041 Sequoiadendron giganteum HOM05D006941 ORTHO05D008361 5.4e-08 61.6 134 31.3
Eucgr.H03674 Eucalyptus grandis HOM05D025724 ORTHO05D008361 9.1e-08 60.8 35 82.9
MSTRG.24772 Avicennia marina HOM05D006941 ORTHO05D008361 1.6e-07 60.1 41 70.7
Zm00001eb094170 Zea mays HOM05D006941 ORTHO05D008361 1.6e-07 60.1 33 84.8
Atru.chr2.2418 Acer truncatum HOM05D006941 ORTHO05D008361 2.7e-07 59.3 41 73.2
Oeu048197.1 Olea europaea HOM05D010625 ORTHO05D008361 2.7e-07 59.3 54 61.1
Medtr2g048470 Medicago truncatula HOM05D006941 ORTHO05D008361 3.5e-07 58.9 33 84.8
PGSC0003DMG400029912 Solanum tuberosum HOM05D006941 ORTHO05D008361 4.5e-07 58.5 34 79.4
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 7.7e-07 57.8 126 31.0
Dinv16400 Davidia involucrata HOM05D006941 ORTHO05D008361 6.6e-06 54.7 31 77.4


User provided reference genes

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