Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 4.8e-291 1003.8 518 100.0
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 3.6e-206 721.8 510 74.3
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 1.1e-197 693.7 526 68.8
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 2.4e-194 682.6 517 69.8
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 1.3e-192 676.8 511 68.3
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.2e-190 670.2 476 73.1
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.7e-184 649.8 536 63.6
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.2e-182 643.7 528 65.0
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.6e-182 643.3 526 65.0
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 8.4e-179 630.9 535 63.9
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 1.4e-178 630.2 522 64.0
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.3e-176 622.9 527 63.2
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.1e-175 620.5 524 62.6
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.1e-175 620.5 524 62.6
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 9.6e-175 617.5 567 60.0
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 9.6e-175 617.5 524 62.0
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 2.1e-174 616.3 517 64.4
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 4.8e-174 615.1 531 60.5
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 6.2e-174 614.8 521 61.4
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.8e-173 613.2 520 61.5
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.2e-172 610.5 529 62.4
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 2.9e-171 605.9 527 60.5
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.2e-170 602.4 520 60.6
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 1.2e-169 600.5 520 60.4
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.2e-169 600.5 520 60.4
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 4.6e-169 598.6 527 60.9
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 7.9e-169 597.8 490 63.1
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.0e-168 597.4 523 61.6
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.0e-168 597.4 520 60.2
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 2.3e-168 596.3 520 61.7
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 3.0e-168 595.9 524 61.1
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 6.7e-168 594.7 524 60.7
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 2.5e-167 592.8 525 60.6
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 2.5e-167 592.8 525 60.6
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 9.6e-167 590.9 506 60.5
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.3e-166 590.5 506 60.5
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.6e-166 590.1 506 60.3
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.8e-166 589.3 521 59.5
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 2.8e-166 589.3 492 62.6
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 1.1e-165 587.4 537 59.6
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 4.0e-165 585.5 526 60.1
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.2e-164 583.9 524 59.5
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 7.6e-164 581.3 513 58.9
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 2.2e-163 579.7 478 62.3
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 2.2e-163 579.7 524 59.7
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 4.9e-163 578.6 519 59.2
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 4.9e-163 578.6 492 62.0
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-162 577.4 478 62.1
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 2.7e-161 572.8 519 59.3
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 6.0e-161 571.6 477 61.0
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 7.9e-161 571.2 511 59.7
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 6.7e-160 568.2 517 58.2
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 3.7e-158 562.4 503 59.2
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 1.8e-157 560.1 560 55.0
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 2.4e-157 559.7 547 56.5
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 4.5e-156 555.4 501 58.9
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 1.0e-155 554.3 527 57.3
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.0e-155 554.3 505 58.6
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 6.5e-155 551.6 495 58.8
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.1e-154 550.8 497 59.8
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.7e-151 538.5 487 60.8
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 4.8e-150 535.4 528 56.8
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.4e-149 533.9 431 64.3
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 4.5e-148 528.9 541 54.2
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 7.2e-146 521.5 517 55.9
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 4.6e-145 518.8 516 54.1
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 6.1e-145 518.5 487 57.5
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 7.4e-143 511.5 401 65.1
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 9.7e-143 511.1 523 54.1
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 2.2e-142 510.0 529 54.6
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 3.2e-138 496.1 497 54.7
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 5.5e-138 495.4 497 54.7
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 2.1e-137 493.4 452 58.6
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 5.7e-135 485.3 529 51.2
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.0e-131 474.6 403 63.5
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.6e-124 449.9 326 70.2
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 2.4e-117 426.8 488 53.1
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 1.2e-116 424.5 483 45.8
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.1e-114 417.9 351 62.7
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 4.8e-110 402.5 341 63.9
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 3.6e-105 386.3 446 48.2
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.7e-99 367.5 493 44.2
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.4e-96 357.8 385 51.2
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 3.4e-87 326.6 423 48.5
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 1.2e-81 308.1 457 41.8
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.7e-78 297.7 344 52.0
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 3.7e-78 296.6 269 59.9
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 8.4e-70 268.9 456 36.6
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 3.2e-69 266.9 461 36.0
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 3.2e-69 266.9 487 38.2
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 4.6e-68 263.1 491 37.5
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.3e-67 261.5 466 36.5
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.1e-67 259.6 506 35.4
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.5e-66 258.1 460 35.9
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.6e-65 253.4 446 37.2
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 6.2e-65 252.7 461 35.1
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 8.1e-65 252.3 476 34.5
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.4e-64 251.5 455 36.5
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 5.8e-63 246.1 453 35.3
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-62 245.0 466 35.8
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.2e-62 244.2 452 37.2
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 3.8e-62 243.4 441 38.3
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 4.9e-62 243.0 441 38.3
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 7.1e-61 239.2 199 59.8
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.6e-60 238.0 434 37.1
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.1e-60 237.7 438 35.8
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.0e-59 235.3 440 38.4
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.0e-59 235.3 462 34.0
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 8.7e-59 232.3 410 37.8
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 3.3e-58 230.3 449 35.9
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.3e-58 230.3 448 35.0
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 4.3e-58 229.9 445 36.0
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 9.6e-58 228.8 449 35.9
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 1.3e-57 228.4 438 34.7
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.3e-57 228.4 438 36.1
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 4.8e-57 226.5 438 34.7
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 8.1e-57 225.7 150 74.0
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 8.1e-57 225.7 368 36.4
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.8e-56 224.6 400 37.2
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.3e-56 223.0 444 36.9
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 2.6e-55 220.7 439 35.8
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.2e-54 217.6 429 33.8
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 6.4e-54 216.1 469 33.0
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.4e-53 214.9 458 35.2
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 3.0e-51 207.2 380 34.2
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 3.3e-50 203.8 460 34.6
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 3.3e-50 203.8 394 36.8
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 4.3e-50 203.4 487 33.1
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 4.3e-50 203.4 409 33.7
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 8.1e-49 199.1 439 31.7
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.8e-48 198.0 454 32.2
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 2.2e-46 191.0 163 59.5
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 1.8e-43 181.4 108 80.6
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.3e-38 165.2 213 45.1
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 7.9e-36 156.0 412 30.6
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.8e-35 154.8 453 28.7
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.2e-33 147.9 263 36.5
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 4.8e-33 146.7 190 50.5
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.4e-32 145.2 249 36.5
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.9e-29 134.8 292 32.9
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.2e-29 132.9 267 36.7
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 9.4e-29 132.5 65 93.8
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 1.6e-28 131.7 92 66.3
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.0e-23 114.8 281 32.7
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 4.5e-23 113.6 139 42.4
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.7e-23 112.8 111 58.6
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 8.5e-22 109.4 135 45.9
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 8.5e-22 109.4 184 37.0
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 1.1e-21 109.0 184 36.4
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 5.1e-19 100.1 163 41.1
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.0e-18 98.2 61 73.8
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 1.7e-17 95.1 59 78.0
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.8e-17 93.6 116 41.4
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 8.2e-17 92.8 139 39.6
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.3e-16 90.1 158 38.6
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 9.1e-16 89.4 141 41.8
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 1.2e-15 89.0 312 28.5
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 5.0e-14 83.6 383 24.8
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.4e-13 82.0 60 61.7
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 5.5e-13 80.1 82 52.4
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 7.2e-13 79.7 108 49.1
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 4.7e-12 77.0 154 27.3
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 4.7e-12 77.0 119 44.5
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 8.0e-12 76.3 56 69.6
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.0e-11 75.9 150 36.0
Lsat_1_v5_gn_8_129341 Lactuca sativa HOM05D003798 ORTHO05D004652 3.9e-11 73.9 90 50.0
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 8.8e-11 72.8 129 33.3
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.5e-10 72.0 104 37.5
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.6e-10 71.2 95 44.2
AL2G38120 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.6e-10 71.2 116 31.0
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 5.7e-10 70.1 82 41.5
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.7e-09 67.4 115 33.9
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 1.8e-08 65.1 90 42.2
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.1e-08 63.9 41 75.6
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 9.1e-08 62.8 72 45.8
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.6e-07 62.0 82 43.9
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 1.6e-07 62.0 123 31.7
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 2.6e-07 61.2 73 49.3
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 2.2e-06 58.2 78 43.6


User provided reference genes

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