Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0059751 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1687.9 870 100.0
HanXRQChr15g0465411 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1687.9 870 100.0
HanXRQChr17g0569701 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1687.9 870 100.0
HanXRQCPg0580321 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1687.9 870 100.0
HanXRQChr03g0087621 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1310.8 672 99.4
HanXRQChr00c0336g0573711 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1231.5 672 94.8
HanXRQChr09g0258471 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1088.6 551 100.0
HanXRQChr15g0465481 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1088.6 551 100.0
HanXRQChr00c0703g0576911 Helianthus annuus HOM05D001070 ORTHO05D005132 1.2e-230 803.9 410 100.0
Peaxi162Scf01305g00038 Petunia axillaris HOM05D001070 ORTHO05D005132 8.7e-213 744.6 968 50.2
Solyc00g500042.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 1.1e-207 727.6 963 48.7
Hma1.2p1_0096F.1_g047620 Hydrangea macrophylla HOM05D001070 ORTHO05D005132 1.1e-204 717.6 792 54.3
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 7.7e-201 704.9 978 48.9
Solyc00g500125.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 1.9e-199 700.3 925 49.3
HanXRQChr13g0413611 Helianthus annuus HOM05D001070 ORTHO05D005132 1.4e-194 684.1 355 98.0
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 1.5e-183 647.5 953 44.9
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 8.9e-157 558.5 964 42.5
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 1.5e-143 514.6 935 40.7
BraSC143t45654Z Brassica rapa HOM05D001070 ORTHO05D005132 6.2e-134 482.6 949 39.4
BraSC59t46556Z Brassica rapa HOM05D001070 ORTHO05D005132 6.2e-134 482.6 949 39.4
BolSC45t60903H Brassica oleracea HOM05D001070 ORTHO05D005132 1.4e-130 471.5 949 39.2
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 1.3e-123 448.4 958 37.6
BcaB03g16407 Brassica carinata HOM05D001070 ORTHO05D005132 1.2e-121 441.8 843 40.0
HanXRQChr08g0222871 Helianthus annuus HOM05D001070 ORTHO05D005132 8.7e-120 435.6 219 99.5
HanXRQChr17g0569771 Helianthus annuus HOM05D001070 ORTHO05D005132 2.4e-114 417.5 230 95.7
Nn1g08629 Nelumbo nucifera HOM05D001070 ORTHO05D005132 3.2e-106 390.6 596 43.8
Hund30366 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.1e-101 375.6 732 37.7
Hund08794 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund12717 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund12844 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund23969 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund27677 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund27830 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund27882 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund28329 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund28437 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund28449 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund28598 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund28612 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund28879 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund30119 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-101 374.8 733 37.9
Hund28938 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund28947 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund28962 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund28978 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29178 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29187 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29245 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29246 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29252 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29274 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29278 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29282 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29286 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29287 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29315 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29440 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29712 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund29819 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund30035 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund30176 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-101 374.4 720 38.2
Hund28953 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.1e-101 374.0 720 38.2
RcHm_v2.0_Chr7g0212321 Rosa chinensis HOM05D001070 ORTHO05D005132 7.1e-98 362.8 520 48.5
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.0e-96 359.0 460 50.4
Migut.D01247 Erythranthe guttata HOM05D001070 ORTHO05D005132 3.3e-95 354.0 568 42.8
Lju5009P0T28 Lonicera japonica HOM05D001070 ORTHO05D005132 5.0e-91 340.1 617 41.7
PSO357G0618 Papaver somniferum HOM05D001070 ORTHO05D005132 4.6e-89 333.6 647 40.5
Hund29754 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.1e-87 328.9 673 37.0
Medtr7g021690 Medicago truncatula HOM05D001070 ORTHO05D005132 1.5e-87 328.6 906 33.1
CAN.G1139.17 Capsicum annuum HOM05D001070 ORTHO05D005132 2.0e-87 328.2 385 52.7
arahy.Tifrunner.gnm1.ann1.B1X1LX Arachis hypogaea HOM05D001070 ORTHO05D005132 6.9e-85 319.7 608 39.8
Lj2P1238T100 Lonicera japonica HOM05D001070 ORTHO05D005132 1.3e-83 315.5 477 45.9
BolSC35t60686H Brassica oleracea HOM05D001070 ORTHO05D005132 1.5e-79 302.0 603 38.3
Hund28952 Selenicereus undatus HOM05D001070 ORTHO05D005132 7.4e-79 299.7 682 35.0
EL10Ac1g01959 Beta vulgaris HOM05D001070 ORTHO05D005132 1.7e-75 288.5 470 41.5
ClCG11G009240 Citrullus lanatus HOM05D001070 ORTHO05D005132 9.4e-74 282.7 351 50.1
Hund30040 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.1e-73 281.6 658 35.0
Hund28975 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.6e-73 280.8 677 34.7
Hund29253 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.6e-73 280.8 677 34.7
EL10As1g23055 Beta vulgaris HOM05D001070 ORTHO05D005132 4.7e-73 280.4 508 41.1
PSO063G4510 Papaver somniferum HOM05D001070 ORTHO05D005132 6.1e-73 280.0 368 47.0
Hund29025 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-72 278.5 650 35.2
HanXRQChr00c0336g0573721 Helianthus annuus HOM05D001070 ORTHO05D010233 1.5e-71 275.4 146 100.0
SalBow1G2240 Salvia bowleyana HOM05D001070 ORTHO05D005132 6.3e-70 270.0 427 43.3
Hund28911 Selenicereus undatus HOM05D001070 ORTHO05D005132 9.1e-69 266.2 645 34.9
HanXRQChr09g0258461 Helianthus annuus HOM05D001070 ORTHO05D010233 4.5e-68 263.8 139 100.0
C07p33480 Brassica napus HOM05D001070 ORTHO05D005132 2.9e-67 261.2 480 39.2
Hund29088 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.7e-59 235.3 630 33.2
BolSC29t60512H Brassica oleracea HOM05D001070 ORTHO05D005132 5.0e-59 233.8 388 41.5
C02p28800 Brassica napus HOM05D001070 ORTHO05D005132 2.5e-58 231.5 383 41.3
ClCG11G009250 Citrullus lanatus HOM05D001070 ORTHO05D005132 3.2e-58 231.1 389 42.7
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.8e-56 223.4 374 42.8
C05p53850 Brassica napus HOM05D001070 ORTHO05D005132 2.0e-52 211.8 351 41.3
BolC2t10603H Brassica oleracea HOM05D001070 ORTHO05D005132 1.9e-50 205.3 421 39.2
Hund29432 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.5e-50 204.9 596 32.0
FvH4_c3g00020 Fragaria vesca HOM05D000533 ORTHO05D001069 2.8e-49 201.4 191 59.2
Peaxi162Scf00030g02113 Petunia axillaris HOM05D001070 ORTHO05D005132 9.8e-47 193.0 465 38.5
Nitab4.5_0004137g0040 Nicotiana tabacum HOM05D001070 ORTHO05D010233 8.0e-41 173.3 205 48.3
GSVIVG01005309001 Vitis vinifera HOM05D001070 ORTHO05D005132 3.1e-40 171.4 543 32.2
MELO3C027053.2 Cucumis melo HOM05D001070 ORTHO05D005132 1.2e-39 169.5 156 60.9
MBI09_g14156_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D005132 3.4e-39 167.9 187 55.6
Hund28853 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.3e-35 156.0 391 34.5
MBI10_g47595_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D005132 1.7e-35 155.6 137 60.6
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 8.9e-32 143.3 235 45.1
Hund28589 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.4e-31 141.0 138 53.6
Peaxi162Scf00030g02112 Petunia axillaris HOM05D001070 ORTHO05D005132 1.4e-29 136.0 266 39.5
Potri.005G150450 Populus trichocarpa HOM05D001070 ORTHO05D005132 9.2e-29 133.3 139 54.7
BolSC37t60799H Brassica oleracea HOM05D001070 ORTHO05D005132 1.6e-28 132.5 265 38.5
Nitab4.5_0006409g0070 Nicotiana tabacum HOM05D001070 ORTHO05D010350 6.0e-28 130.6 170 49.4
Nitab4.5_0012234g0050 Nicotiana tabacum HOM05D001070 ORTHO05D005132 8.6e-27 126.7 176 42.0
Peaxi162Scf00080g00527 Petunia axillaris HOM05D001070 ORTHO05D036944 3.3e-26 124.8 162 48.1
Gohir.A09G045792 Gossypium hirsutum HOM05D001070 ORTHO05D005132 1.4e-24 119.4 265 36.2
MBI08_g37092_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D005132 3.1e-24 118.2 129 51.2
Gohir.D11G334275 Gossypium hirsutum HOM05D001070 ORTHO05D005132 8.9e-24 116.7 277 35.4
Gohir.1Z049494 Gossypium hirsutum HOM05D001070 ORTHO05D005132 1.2e-23 116.3 277 34.7
Gohir.A09G039280 Gossypium hirsutum HOM05D001070 ORTHO05D005132 2.6e-23 115.2 269 33.8
Gohir.D11G237240 Gossypium hirsutum HOM05D001070 ORTHO05D005132 1.3e-22 112.8 277 34.7
Medtr2g039370 Medicago truncatula HOM05D001070 ORTHO05D005132 4.9e-22 110.9 147 44.9
arahy.Tifrunner.gnm1.ann1.1Y8W5R Arachis hypogaea HOM05D001070 ORTHO05D018510 6.4e-22 110.5 88 62.5
Solyc11g021240.3 Solanum lycopersicum HOM05D001070 ORTHO05D005132 6.4e-22 110.5 102 62.7
Gorai.004G219800 Gossypium raimondii HOM05D001070 ORTHO05D005132 1.4e-21 109.4 277 34.3
Hund28588 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-21 108.6 335 31.3
Hund29110 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.4e-21 108.6 335 31.3
Medtr6g042180 Medicago truncatula HOM05D001070 ORTHO05D005132 4.1e-21 107.8 89 57.3
Nitab4.5_0007104g0080 Nicotiana tabacum HOM05D001070 ORTHO05D005132 4.1e-21 107.8 149 47.0
Hund27629 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.1e-21 107.8 354 31.1
MBI08_g41352_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D005132 1.2e-20 106.3 232 38.4
Gorai.010G136000 Gossypium raimondii HOM05D001070 ORTHO05D005132 1.3e-19 102.8 245 37.6
Hund31094 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.3e-19 102.8 105 52.4
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 3.0e-19 101.7 179 43.6
Lj9P89T23 Lonicera japonica HOM05D001070 ORTHO05D005132 5.6e-18 97.4 200 41.0
HanXRQChr14g0437931 Helianthus annuus HOM05D000445 ORTHO05D000314 2.4e-16 92.0 48 97.9
HanXRQChr00c0703g0576901 Helianthus annuus HOM05D001070 ORTHO05D010233 4.0e-16 91.3 43 100.0
HanXRQChr15g0465491 Helianthus annuus HOM05D001070 ORTHO05D010233 4.0e-16 91.3 43 100.0
Solyc07g041680.2 Solanum lycopersicum HOM05D001070 ORTHO05D005132 1.5e-15 89.4 104 50.0
Gorai.004G136300 Gossypium raimondii HOM05D001070 ORTHO05D005132 3.4e-15 88.2 453 25.8
Gohir.D08G133232 Gossypium hirsutum HOM05D001070 ORTHO05D005132 5.8e-15 87.4 87 54.0
Gohir.A02G108504 Gossypium hirsutum HOM05D001070 ORTHO05D005132 7.6e-15 87.0 121 47.9
SEGI_27427 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 2.9e-14 85.1 216 33.8
SEGI_20187 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 6.4e-14 84.0 216 33.3
SEGI_30878 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 6.4e-14 84.0 216 33.3
SEGI_36485 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 6.4e-14 84.0 216 33.3
arahy.Tifrunner.gnm1.ann1.IUHB90 Arachis hypogaea HOM05D001070 ORTHO05D005132 8.4e-14 83.6 93 50.5
Glyma.18G155800 Glycine max HOM05D001070 ORTHO05D005132 1.1e-13 83.2 226 35.4
Hund29500 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.4e-13 82.8 228 32.0
Nitab4.5_0006502g0050 Nicotiana tabacum HOM05D001070 ORTHO05D036944 1.9e-13 82.4 172 39.0
Gohir.D09G079833 Gossypium hirsutum HOM05D001070 ORTHO05D005132 3.2e-13 81.6 73 53.4
Medtr7g104140 Medicago truncatula HOM05D001070 ORTHO05D005132 3.2e-13 81.6 88 52.3
Medtr8g093760 Medicago truncatula HOM05D001070 ORTHO05D005132 3.2e-13 81.6 226 31.0
Solyc02g011820.3 Solanum lycopersicum HOM05D001070 ORTHO05D005132 3.2e-13 81.6 137 39.4
Solyc01g009550.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 4.2e-13 81.3 84 56.0
Hund28852 Selenicereus undatus HOM05D001070 ORTHO05D005132 5.4e-13 80.9 184 35.3
arahy.Tifrunner.gnm1.ann1.LH3NEH Arachis hypogaea HOM05D001070 ORTHO05D005132 9.2e-13 80.1 193 35.8
Gorai.006G079500 Gossypium raimondii HOM05D001070 ORTHO05D005132 9.2e-13 80.1 121 45.5
Solyc02g011830.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 9.2e-13 80.1 67 55.2
SEGI_38135 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 1.2e-12 79.7 117 41.9
SEGI_01987 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 1.0e-11 76.6 232 31.0
GSVIVG01029921001 Vitis vinifera HOM05D001070 ORTHO05D005132 1.7e-11 75.9 153 41.2
Nn3g17667 Nelumbo nucifera HOM05D000388 ORTHO05D000473 4.3e-10 71.2 203 34.0
Nitab4.5_0007400g0070 Nicotiana tabacum HOM05D001070 ORTHO05D036944 5.6e-10 70.9 159 38.4
Gorai.002G047700 Gossypium raimondii HOM05D001070 ORTHO05D005132 3.6e-09 68.2 128 38.3
Medtr1g051590 Medicago truncatula HOM05D000533 ORTHO05D001069 8.1e-09 67.0 141 36.2
HanXRQChr03g0087611 Helianthus annuus HOM05D001070 ORTHO05D010233 3.1e-08 65.1 28 100.0
Nn029s41577 Nelumbo nucifera HOM05D001070 ORTHO05D005132 4.0e-08 64.7 32 81.2
Gohir.D11G334350 Gossypium hirsutum HOM05D001070 ORTHO05D010233 1.5e-07 62.8 112 42.9
Solyc10g047390.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 2.0e-07 62.4 77 46.8
Gohir.A13G086425 Gossypium hirsutum HOM05D001070 ORTHO05D005132 4.9e-06 57.8 120 35.0
Gorai.012G102100 Gossypium raimondii HOM05D001070 ORTHO05D005132 4.9e-06 57.8 129 34.9
SGA_v2.0_scaffold150G36658 Striga asiatica HOM05D000533 ORTHO05D010350 6.4e-06 57.4 122 36.1


User provided reference genes

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