Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 1.1e-134 483.4 273 100.0
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 1.0e-87 327.4 186 91.4
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 5.2e-71 271.9 245 61.6
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.5e-70 270.4 245 61.2
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.7e-69 266.9 248 61.3
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 1.1e-68 264.2 248 62.1
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 9.2e-68 261.2 250 62.0
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 1.0e-66 257.7 250 59.2
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.0e-66 257.7 250 59.2
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.0e-66 257.7 250 59.2
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.7e-66 256.9 248 59.3
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.7e-66 256.9 247 59.1
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 3.9e-66 255.8 246 60.2
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.1e-65 254.2 246 58.9
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 1.9e-65 253.4 248 59.7
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 2.5e-65 253.1 246 58.9
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 2.5e-65 253.1 249 58.6
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 5.6e-65 251.9 209 67.9
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.6e-64 250.4 250 58.0
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 2.1e-64 250.0 272 55.9
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 2.1e-64 250.0 245 60.8
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 2.1e-64 250.0 249 59.0
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.8e-64 249.6 248 58.1
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 2.8e-64 249.6 248 58.9
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 4.7e-64 248.8 250 57.6
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 4.7e-64 248.8 242 59.9
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 6.2e-64 248.4 248 58.5
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 8.0e-64 248.1 253 59.7
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 8.0e-64 248.1 253 59.7
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.4e-63 247.3 256 60.9
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 1.4e-63 247.3 248 58.5
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 1.8e-63 246.9 255 59.2
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 4.0e-63 245.7 244 59.0
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 5.2e-63 245.4 221 62.4
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 5.2e-63 245.4 250 58.0
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 6.8e-63 245.0 247 60.3
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 8.9e-63 244.6 251 57.8
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 1.5e-62 243.8 207 69.1
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 2.0e-62 243.4 243 60.5
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 3.4e-62 242.7 235 57.9
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 3.4e-62 242.7 248 60.1
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 9.8e-62 241.1 248 59.3
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 2.2e-61 240.0 248 58.1
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 2.2e-61 240.0 250 58.8
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 3.7e-61 239.2 248 56.5
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 3.7e-61 239.2 243 58.0
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 4.9e-61 238.8 252 58.7
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 6.4e-61 238.4 253 57.7
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 8.3e-61 238.0 246 58.9
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 4.1e-60 235.7 260 54.6
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 5.4e-60 235.3 215 59.1
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.2e-59 234.2 216 58.3
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 1.6e-59 233.8 234 60.3
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.1e-59 233.4 257 53.7
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 2.7e-59 233.0 259 56.8
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 4.6e-59 232.3 211 63.0
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 6.0e-59 231.9 251 56.6
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 7.8e-59 231.5 253 54.5
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 1.3e-58 230.7 255 57.6
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 1.3e-58 230.7 221 60.6
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.7e-58 230.3 211 62.1
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 3.0e-58 229.6 297 48.1
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 3.9e-58 229.2 252 56.3
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.1e-58 228.8 215 58.1
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 1.1e-57 227.6 221 61.1
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 1.5e-57 227.3 236 55.5
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 3.3e-57 226.1 240 57.5
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 9.5e-57 224.6 257 54.9
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 1.6e-56 223.8 243 54.7
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 2.8e-56 223.0 263 54.0
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 2.8e-56 223.0 211 60.2
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 3.6e-56 222.6 214 62.1
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 6.2e-56 221.9 240 53.3
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 6.2e-56 221.9 214 61.2
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 2.3e-55 219.9 244 53.3
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 5.8e-54 215.3 191 62.3
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 7.5e-54 214.9 216 58.8
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 1.7e-53 213.8 215 56.3
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 1.7e-53 213.8 210 58.6
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 1.7e-53 213.8 251 53.4
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 4.9e-53 212.2 253 54.2
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 7.1e-52 208.4 227 55.9
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 7.1e-52 208.4 176 66.5
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 6.0e-51 205.3 279 49.1
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 1.7e-50 203.8 258 51.6
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 6.6e-50 201.8 258 51.6
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 1.5e-49 200.7 204 58.3
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 1.5e-49 200.7 204 58.3
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 7.3e-49 198.4 212 57.1
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 7.3e-49 198.4 211 57.3
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 9.6e-49 198.0 239 54.0
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 9.6e-49 198.0 239 54.0
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 9.6e-49 198.0 239 54.0
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 9.6e-49 198.0 220 55.0
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 3.6e-48 196.1 220 55.0
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 6.2e-48 195.3 207 56.0
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.4e-47 194.1 207 56.0
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.0e-47 192.6 232 52.2
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.3e-45 187.6 211 51.7
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 3.8e-45 186.0 237 51.5
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 4.9e-45 185.7 211 51.7
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 6.4e-45 185.3 222 52.7
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 6.4e-45 185.3 194 57.7
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 2.1e-43 180.3 246 48.8
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 1.7e-42 177.2 189 57.1
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.1e-41 174.5 181 57.5
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 9.6e-41 171.4 176 55.7
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 7.6e-38 161.8 291 42.3
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 9.9e-38 161.4 367 35.7
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 6.4e-37 158.7 191 55.0
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 2.4e-36 156.8 181 52.5
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 7.1e-36 155.2 262 42.4
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.2e-35 154.5 187 53.5
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 1.3e-32 144.4 188 50.0
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.6e-32 142.9 190 50.0
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.5e-25 120.9 179 48.0
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.9e-25 120.6 250 38.0
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 9.6e-25 118.2 201 42.3
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 1.1e-23 114.8 264 39.0
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 2.2e-21 107.1 130 53.8
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 6.5e-21 105.5 197 40.1
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 1.9e-20 104.0 56 83.9
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 2.5e-20 103.6 146 49.3
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 4.3e-17 92.8 161 42.2
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 4.8e-16 89.4 60 71.7
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 6.9e-15 85.5 53 73.6
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 1.9e-12 77.4 128 43.8
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 9.3e-12 75.1 145 38.6
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 2.1e-11 73.9 55 61.8
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.5e-06 57.8 64 54.7
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 4.5e-06 56.2 46 65.2
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 1.0e-05 55.1 44 65.9


User provided reference genes

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