Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 3.9e-44 181.0 89 100.0
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 2.1e-29 132.1 86 69.8
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 8.8e-20 100.1 87 54.0
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 1.2e-19 99.8 81 58.0
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.6e-19 98.6 88 55.7
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.6e-19 98.6 88 55.7
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 2.6e-19 98.6 88 55.7
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 5.7e-19 97.4 89 56.2
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 7.5e-19 97.1 89 53.9
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 7.5e-19 97.1 87 54.0
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 1.3e-18 96.3 76 57.9
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.3e-18 96.3 87 52.9
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.7e-18 95.9 80 55.0
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 2.2e-18 95.5 79 54.4
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 2.2e-18 95.5 88 53.4
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 3.7e-18 94.7 81 51.9
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 4.8e-18 94.4 83 55.4
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 6.3e-18 94.0 66 66.7
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 6.3e-18 94.0 79 57.0
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 6.3e-18 94.0 85 51.8
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 8.3e-18 93.6 90 51.1
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.1e-17 93.2 93 50.5
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 1.8e-17 92.4 95 49.5
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.8e-17 92.4 87 54.0
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 1.8e-17 92.4 82 54.9
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 1.8e-17 92.4 86 53.5
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 1.8e-17 92.4 66 62.1
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 1.8e-17 92.4 86 54.7
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.4e-17 92.0 95 48.4
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 2.4e-17 92.0 92 53.3
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 2.4e-17 92.0 85 48.2
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 3.1e-17 91.7 83 54.2
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 4.1e-17 91.3 76 56.6
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 5.4e-17 90.9 83 55.4
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 9.1e-17 90.1 87 50.6
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 9.1e-17 90.1 83 54.2
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 9.1e-17 90.1 86 50.0
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.2e-16 89.7 84 53.6
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.6e-16 89.4 86 53.5
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 1.6e-16 89.4 83 53.0
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 1.6e-16 89.4 63 61.9
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 2.7e-16 88.6 88 50.0
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 2.7e-16 88.6 85 47.1
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 3.5e-16 88.2 78 51.3
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 3.5e-16 88.2 94 50.0
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 3.5e-16 88.2 83 51.8
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 3.5e-16 88.2 85 55.3
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 4.5e-16 87.8 88 47.7
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.5e-16 87.8 78 56.4
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 4.5e-16 87.8 78 56.4
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 5.9e-16 87.4 82 47.6
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 7.7e-16 87.0 87 47.1
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 7.7e-16 87.0 85 47.1
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.7e-16 87.0 78 55.1
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 1.3e-15 86.3 82 52.4
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 1.7e-15 85.9 85 51.8
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 2.9e-15 85.1 88 47.7
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.9e-15 85.1 83 48.2
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 2.9e-15 85.1 85 50.6
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 2.9e-15 85.1 81 51.9
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 3.8e-15 84.7 87 47.1
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 3.8e-15 84.7 87 47.1
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 3.8e-15 84.7 94 48.9
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 3.8e-15 84.7 58 60.3
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 3.8e-15 84.7 78 48.7
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 3.8e-15 84.7 82 54.9
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 5.0e-15 84.3 80 50.0
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 5.0e-15 84.3 83 47.0
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 5.0e-15 84.3 81 50.6
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 5.0e-15 84.3 58 58.6
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 6.6e-15 84.0 83 48.2
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 6.6e-15 84.0 84 50.0
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 8.6e-15 83.6 76 51.3
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 8.6e-15 83.6 74 51.4
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 8.6e-15 83.6 98 49.0
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 8.6e-15 83.6 80 55.0
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 1.1e-14 83.2 83 48.2
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 1.1e-14 83.2 83 48.2
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 1.1e-14 83.2 83 48.2
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.1e-14 83.2 65 56.9
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.1e-14 83.2 80 51.2
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.1e-14 83.2 80 51.2
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 1.1e-14 83.2 79 48.1
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 1.9e-14 82.4 78 52.6
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.9e-14 82.4 85 48.2
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 2.5e-14 82.0 61 57.4
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 2.5e-14 82.0 87 49.4
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 2.5e-14 82.0 75 54.7
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 2.5e-14 82.0 88 45.5
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 3.3e-14 81.6 82 48.8
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 3.3e-14 81.6 85 48.2
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 3.3e-14 81.6 80 46.2
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 3.3e-14 81.6 81 53.1
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 4.2e-14 81.3 81 48.1
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 4.2e-14 81.3 90 42.2
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 4.2e-14 81.3 83 49.4
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 5.5e-14 80.9 88 42.0
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 5.5e-14 80.9 84 48.8
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 5.5e-14 80.9 80 46.2
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 1.2e-13 79.7 60 56.7
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 1.6e-13 79.3 60 56.7
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 2.8e-13 78.6 65 53.8
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 3.6e-13 78.2 93 47.3
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 3.6e-13 78.2 64 57.8
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 4.7e-13 77.8 86 47.7
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 4.7e-13 77.8 59 59.3
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 4.7e-13 77.8 59 59.3
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 6.1e-13 77.4 79 45.6
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 6.1e-13 77.4 82 50.0
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 8.0e-13 77.0 79 49.4
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.0e-12 76.6 79 49.4
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 1.0e-12 76.6 70 45.7
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 1.0e-12 76.6 70 45.7
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 1.0e-12 76.6 70 45.7
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 1.0e-12 76.6 70 45.7
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 1.0e-12 76.6 84 48.8
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.0e-12 76.6 64 57.8
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.0e-12 76.6 67 55.2
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.4e-12 76.3 68 48.5
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.4e-12 76.3 84 45.2
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 1.8e-12 75.9 80 42.5
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 4.0e-12 74.7 64 50.0
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 6.8e-12 73.9 80 46.2
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 8.9e-12 73.6 79 43.0
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 8.9e-12 73.6 80 43.8
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 8.9e-12 73.6 59 55.9
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 1.2e-11 73.2 82 41.5
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.5e-11 72.8 88 38.6
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 9.8e-11 70.1 88 43.2
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 1.1e-09 66.6 84 42.9
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 2.4e-09 65.5 83 44.6
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.4e-09 65.5 76 43.4
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 4.5e-08 61.2 81 35.8


User provided reference genes

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