Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 1.1e-62 243.0 112 100.0
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 1.4e-38 162.9 97 78.4
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 4.1e-38 161.4 97 77.3
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.1e-30 135.2 93 64.5
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.6e-26 121.7 97 56.7
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.4e-25 119.8 94 56.4
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 3.3e-24 115.2 97 56.7
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 9.7e-24 113.6 93 60.2
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 9.7e-24 113.6 93 60.2
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 8.2e-23 110.5 100 55.0
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 6.1e-18 94.4 107 40.2
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 6.1e-18 94.4 107 40.2
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 6.1e-18 94.4 107 40.2
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 8.0e-18 94.0 109 45.0
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 4.0e-17 91.7 111 43.2
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 5.2e-17 91.3 109 45.0
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 1.5e-16 89.7 109 43.1
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 2.0e-16 89.4 109 42.2
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.0e-16 89.4 109 44.0
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.6e-16 89.0 109 42.2
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.3e-16 88.6 109 42.2
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 3.3e-16 88.6 104 43.3
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 9.7e-16 87.0 109 41.3
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 4.8e-15 84.7 109 44.0
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 6.3e-15 84.3 109 44.0
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 5.3e-14 81.3 104 38.5
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 1.2e-13 80.1 109 42.2
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.6e-13 79.7 109 36.7
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 1.6e-13 79.7 95 42.1
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.0e-13 79.3 107 43.0
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.0e-13 79.3 109 36.7
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 2.7e-13 79.0 97 42.3
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 2.7e-13 79.0 108 41.7
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 3.5e-13 78.6 107 38.3
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 3.5e-13 78.6 109 39.4
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 4.5e-13 78.2 110 40.0
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 4.5e-13 78.2 97 39.2
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 4.5e-13 78.2 97 41.2
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 5.9e-13 77.8 101 38.6
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 7.7e-13 77.4 97 41.2
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 1.0e-12 77.0 111 38.7
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.3e-12 76.6 110 37.3
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.7e-12 76.3 82 43.9
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.2e-12 75.9 90 45.6
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.2e-12 75.9 90 45.6
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.8e-12 75.1 91 42.9
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.8e-12 75.1 113 38.9
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 3.8e-12 75.1 82 41.5
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.8e-12 75.1 81 42.0
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 3.8e-12 75.1 104 36.5
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.0e-12 74.7 82 43.9
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 5.0e-12 74.7 108 37.0
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 6.5e-12 74.3 90 44.4
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 6.5e-12 74.3 108 39.8
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 8.5e-12 73.9 109 35.8
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 1.5e-11 73.2 82 43.9
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 1.5e-11 73.2 92 39.1
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 2.5e-11 72.4 111 38.7
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 5.5e-11 71.2 81 44.4
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.5e-11 71.2 110 39.1
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.5e-11 71.2 110 39.1
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 5.5e-11 71.2 111 36.0
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 5.5e-11 71.2 111 36.0
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 9.4e-11 70.5 90 38.9
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 9.4e-11 70.5 97 40.2
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 9.4e-11 70.5 87 39.1
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 9.4e-11 70.5 70 48.6
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.4e-11 70.5 117 37.6
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 9.4e-11 70.5 111 37.8
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 1.2e-10 70.1 111 36.0
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 1.2e-10 70.1 115 37.4
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 1.2e-10 70.1 75 41.3
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 1.6e-10 69.7 86 38.4
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 2.1e-10 69.3 91 40.7
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 2.1e-10 69.3 87 37.9
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 2.1e-10 69.3 87 37.9
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-10 69.3 119 37.8
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.7e-10 68.9 95 41.1
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.7e-10 68.2 107 36.4
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 4.7e-10 68.2 84 38.1
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 4.7e-10 68.2 84 38.1
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 6.1e-10 67.8 84 38.1
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 6.1e-10 67.8 84 38.1
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.0e-09 67.0 93 36.6
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.0e-09 67.0 109 37.6
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.0e-09 67.0 109 37.6
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.0e-09 67.0 114 35.1
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.8e-09 66.2 70 44.3
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.8e-09 66.2 107 35.5
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-09 66.2 116 37.1
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 1.8e-09 66.2 70 44.3
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.3e-09 65.9 110 35.5
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 2.3e-09 65.9 81 39.5
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 2.3e-09 65.9 83 38.6
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 3.0e-09 65.5 70 41.4
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 5.2e-09 64.7 94 39.4
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.2e-09 64.7 75 42.7
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 5.2e-09 64.7 92 37.0
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 1.2e-08 63.5 82 39.0
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-08 63.5 112 35.7
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.0e-08 62.8 110 32.7
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.0e-08 62.8 83 36.1
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.0e-08 62.8 112 35.7
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.0e-08 62.8 146 30.8
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.6e-08 62.4 111 34.2
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 3.4e-08 62.0 84 38.1
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.4e-08 61.6 88 37.5
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.4e-08 61.6 88 37.5
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 7.5e-08 60.8 87 36.8
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 9.8e-08 60.5 94 37.2
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-07 60.1 113 35.4
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-07 60.1 113 33.6
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-07 60.1 92 37.0
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.7e-07 59.7 113 35.4
ECA233G5781 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.7e-07 58.5 40 52.5
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 6.3e-07 57.8 114 34.2
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.3e-07 57.4 59 45.8
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 1.4e-06 56.6 106 31.1
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.4e-06 55.8 112 35.7
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.4e-06 55.8 95 34.7
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 2.4e-06 55.8 91 37.4
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 3.1e-06 55.5 131 32.8
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.1e-06 55.1 94 36.2
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.1e-06 55.1 111 35.1


User provided reference genes

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