Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.8e-126 456.1 247 100.0
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.2e-114 416.8 247 86.2
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 3.0e-110 402.1 261 81.2
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 1.5e-106 389.8 247 82.6
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 9.4e-104 380.6 259 78.0
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 9.4e-104 380.6 259 77.6
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 3.6e-103 378.6 259 77.2
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 2.3e-102 375.9 259 77.2
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 5.2e-102 374.8 265 76.2
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 2.0e-101 372.9 266 75.2
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 3.3e-101 372.1 259 76.4
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 2.8e-100 369.0 257 77.0
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.8e-100 369.0 259 74.5
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 4.8e-100 368.2 259 74.5
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.1e-99 367.1 257 75.1
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.1e-99 367.1 259 74.1
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.8e-99 366.3 258 74.4
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 1.8e-99 366.3 258 76.0
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.1e-99 365.5 259 75.7
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.1e-99 365.5 259 75.7
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 3.1e-99 365.5 258 74.4
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 4.1e-99 365.2 259 74.1
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 4.1e-99 365.2 259 75.3
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.1e-99 365.2 259 75.3
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 4.1e-99 365.2 257 75.9
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 9.1e-99 364.0 259 74.1
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.2e-98 363.6 257 76.3
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.6e-98 363.2 259 73.4
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.6e-98 363.2 259 75.7
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 2.6e-98 362.5 258 73.3
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 3.5e-98 362.1 267 72.7
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 5.9e-98 361.3 259 74.1
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 5.9e-98 361.3 257 75.1
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 7.7e-98 360.9 267 73.0
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.3e-97 360.1 267 73.0
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.7e-97 359.8 267 73.8
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.7e-97 359.8 257 75.5
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.7e-97 359.8 267 74.5
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.2e-97 359.4 260 75.0
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 2.2e-97 359.4 267 72.7
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 2.9e-97 359.0 259 73.7
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 8.5e-97 357.5 266 72.9
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 8.5e-97 357.5 266 73.3
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.5e-96 356.7 258 75.2
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 2.5e-96 355.9 259 73.7
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 3.2e-96 355.5 259 72.6
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 4.2e-96 355.1 258 73.6
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 5.5e-96 354.8 250 74.0
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 7.2e-96 354.4 259 73.0
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.2e-96 354.4 267 71.5
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 7.2e-96 354.4 259 73.0
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 9.4e-96 354.0 247 76.1
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.2e-95 353.6 267 71.5
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.2e-95 353.6 253 73.9
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.6e-95 353.2 258 72.5
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.6e-95 353.2 265 73.6
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.7e-95 352.4 251 75.3
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 2.7e-95 352.4 250 73.6
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 2.7e-95 352.4 250 74.4
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 2.7e-95 352.4 252 74.6
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 4.7e-95 351.7 258 73.6
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 2.3e-94 349.4 259 71.8
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 3.0e-94 349.0 266 71.8
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 3.0e-94 349.0 259 71.8
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 3.0e-94 349.0 250 72.4
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 4.0e-94 348.6 258 72.1
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 4.0e-94 348.6 259 71.8
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 5.2e-94 348.2 266 71.4
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 5.2e-94 348.2 259 73.4
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 6.8e-94 347.8 257 72.8
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.2e-93 347.1 258 71.7
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 1.5e-93 346.7 259 71.4
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 2.0e-93 346.3 251 72.1
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 3.4e-93 345.5 259 71.0
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 4.4e-93 345.1 266 69.5
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 5.7e-93 344.7 282 67.4
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 5.7e-93 344.7 251 71.7
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 9.8e-93 344.0 251 72.9
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 1.3e-92 343.6 258 72.9
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 1.7e-92 343.2 254 72.0
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.8e-92 342.4 257 72.0
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.8e-92 342.4 265 70.9
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 4.8e-92 341.7 259 71.4
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.8e-92 341.7 265 70.9
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 8.3e-92 340.9 250 72.8
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.1e-91 340.5 248 73.0
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 1.1e-91 340.5 264 70.5
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.1e-91 340.5 261 70.1
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.4e-91 340.1 274 67.9
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.4e-91 340.1 260 70.4
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 3.1e-91 339.0 259 70.7
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 4.1e-91 338.6 266 70.3
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.1e-91 338.6 257 71.6
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 5.4e-91 338.2 260 71.5
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.5e-90 335.5 251 70.9
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 4.5e-90 335.1 282 66.3
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.0e-89 334.0 249 71.1
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 5.0e-89 331.6 248 71.0
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 8.5e-89 330.9 260 70.0
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 8.5e-89 330.9 255 69.8
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 1.1e-88 330.5 254 69.7
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 3.2e-88 328.9 300 62.7
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 4.2e-88 328.6 256 69.9
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.5e-88 328.2 260 70.4
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.6e-87 326.6 261 69.3
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 6.1e-87 324.7 257 67.7
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.0e-86 323.9 258 67.4
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.8e-86 323.2 307 61.2
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 2.3e-86 322.8 257 67.3
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 6.8e-86 321.2 258 66.7
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.2e-85 320.5 261 67.0
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 1.5e-85 320.1 257 66.5
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 2.6e-85 319.3 253 67.6
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 5.7e-85 318.2 259 66.4
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.7e-84 316.6 257 65.8
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 4.9e-84 315.1 256 66.8
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 4.9e-84 315.1 256 66.8
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 6.3e-84 314.7 257 65.4
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 8.3e-84 314.3 256 65.6
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.4e-83 312.8 257 65.8
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.4e-83 312.8 252 66.7
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.1e-83 312.4 255 67.1
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 5.4e-83 311.6 276 62.7
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.6e-82 310.1 252 66.3
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 2.7e-82 309.3 196 81.1
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.5e-82 308.9 256 64.5
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 7.7e-82 307.8 259 65.3
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.7e-81 306.6 255 64.7
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.9e-81 305.8 252 67.1
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 6.6e-81 304.7 238 69.7
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.5e-80 302.8 257 64.2
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.8e-79 299.3 224 72.3
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 3.6e-79 298.9 189 79.9
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.0e-78 297.4 196 78.6
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 1.4e-78 297.0 255 63.9
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.8e-78 296.6 256 64.1
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 2.3e-78 296.2 259 64.1
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.0e-78 295.8 263 63.1
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 5.7e-77 291.6 258 62.0
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 2.9e-76 289.3 267 61.4
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 6.3e-76 288.1 235 65.5
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.1e-75 287.3 256 61.3
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 5.4e-75 285.0 267 61.8
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 7.0e-75 284.6 256 61.7
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 7.0e-75 284.6 236 65.7
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.6e-74 282.0 144 95.1
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 1.0e-73 280.8 256 59.8
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 1.9e-72 276.6 256 60.5
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 4.3e-72 275.4 255 60.0
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.2e-71 273.9 250 59.6
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.6e-69 266.2 189 74.6
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.2e-46 188.7 166 63.3
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 6.6e-41 171.8 213 49.8
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 3.6e-39 166.0 169 53.8
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 1.4e-38 164.1 190 48.4
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.6e-31 140.6 74 97.3
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.1e-30 137.9 93 74.2
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-27 127.5 147 49.7
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.9e-27 127.1 236 38.1
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.7e-26 123.2 76 80.3
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 1.2e-18 97.8 177 40.1
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 4.6e-18 95.9 124 41.9
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 6.3e-15 85.5 41 92.7
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 1.1e-14 84.7 93 54.8
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.8e-14 84.0 100 53.0
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 8.4e-12 75.1 43 72.1
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.4e-11 74.3 41 78.0
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.2e-11 72.0 40 75.0
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 2.5e-08 63.5 105 34.3
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 3.3e-08 63.2 138 34.8
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 1.4e-06 57.8 32 90.6


User provided reference genes

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