Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 9.2e-74 280.4 172 100.0
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 8.4e-59 230.7 166 86.1
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 6.0e-57 224.6 172 86.0
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 4.8e-54 214.9 172 83.1
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 7.4e-47 191.0 169 74.6
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 7.4e-47 191.0 174 66.1
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 1.6e-46 189.9 171 71.3
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 4.8e-46 188.3 164 74.4
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 4.8e-46 188.3 168 73.8
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.8e-45 186.4 169 73.4
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 9.0e-45 184.1 170 58.8
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 1.5e-44 183.3 168 72.0
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 2.0e-44 183.0 170 67.1
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 3.4e-44 182.2 167 59.9
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 9.9e-44 180.6 174 69.5
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 9.9e-44 180.6 168 58.3
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 1.3e-43 180.3 166 72.9
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 1.7e-43 179.9 178 70.8
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 2.2e-43 179.5 172 71.5
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.9e-43 179.1 160 72.5
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 3.8e-43 178.7 168 59.5
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 3.8e-43 178.7 169 58.6
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 4.9e-43 178.3 175 59.4
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 4.9e-43 178.3 170 59.4
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 6.4e-43 177.9 174 56.9
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 6.4e-43 177.9 174 59.8
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.1e-42 177.2 172 57.0
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 1.1e-42 177.2 158 74.1
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 1.1e-42 177.2 163 73.0
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.4e-42 176.8 172 55.8
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.4e-42 176.8 172 69.2
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.4e-42 176.8 168 57.7
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.9e-42 176.4 169 72.2
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 4.2e-42 175.3 158 72.2
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 5.5e-42 174.9 179 67.0
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 5.5e-42 174.9 169 58.0
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 7.1e-42 174.5 179 67.0
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 7.1e-42 174.5 179 67.0
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 7.1e-42 174.5 179 63.7
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 9.3e-42 174.1 178 62.4
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.6e-41 173.3 173 56.6
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.6e-41 173.3 173 56.6
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.6e-41 173.3 184 55.4
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 2.1e-41 172.9 167 57.5
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 3.5e-41 172.2 164 57.9
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 1.0e-40 170.6 171 68.4
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 3.9e-40 168.7 164 56.7
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 3.9e-40 168.7 166 68.1
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 5.1e-40 168.3 169 70.4
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 6.7e-40 167.9 176 54.5
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 8.7e-40 167.5 168 56.0
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.1e-39 167.2 163 57.1
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 3.3e-39 165.6 168 55.4
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 4.3e-39 165.2 168 54.2
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 4.3e-39 165.2 164 56.7
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 7.4e-39 164.5 162 70.4
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 7.4e-39 164.5 168 66.7
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.1e-38 162.9 166 56.0
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 2.1e-38 162.9 168 54.2
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 2.8e-38 162.5 168 54.8
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 2.8e-38 162.5 164 64.0
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 3.7e-38 162.2 180 52.8
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 3.7e-38 162.2 167 55.7
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 6.2e-38 161.4 171 56.1
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.1e-37 160.6 165 52.7
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 1.1e-37 160.6 175 50.9
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 1.1e-37 160.6 171 55.6
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.4e-37 160.2 179 63.7
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.8e-37 159.8 167 55.1
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 2.4e-37 159.5 186 64.5
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 3.1e-37 159.1 174 50.6
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 4.0e-37 158.7 169 50.3
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 1.2e-36 157.1 170 68.2
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 1.2e-36 157.1 163 54.6
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 2.0e-36 156.4 169 53.3
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 3.4e-36 155.6 182 51.1
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 3.4e-36 155.6 167 52.1
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 5.8e-36 154.8 113 77.9
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.0e-35 154.1 166 53.6
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 1.3e-35 153.7 182 63.2
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 3.8e-35 152.1 166 63.3
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 4.9e-35 151.8 171 52.0
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.9e-35 151.8 171 53.8
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 4.9e-35 151.8 175 60.6
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 2.5e-34 149.4 168 50.6
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 7.1e-34 147.9 165 53.3
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 9.3e-34 147.5 154 65.6
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 9.3e-34 147.5 133 72.2
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.2e-33 147.1 173 49.1
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 1.2e-33 147.1 172 47.7
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.6e-33 146.7 172 49.4
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 2.7e-33 146.0 175 49.1
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 3.5e-33 145.6 170 51.8
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 3.5e-33 145.6 172 46.5
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 3.5e-33 145.6 172 46.5
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 4.6e-33 145.2 162 50.0
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 7.9e-33 144.4 172 45.9
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.3e-32 142.9 167 66.5
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 3.0e-32 142.5 166 51.8
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 6.7e-32 141.4 175 48.0
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 8.7e-32 141.0 159 47.8
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 1.5e-31 140.2 106 82.1
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 5.7e-31 138.3 174 46.6
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 9.7e-31 137.5 117 66.7
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 2.2e-30 136.3 163 49.1
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 2.8e-30 136.0 180 43.9
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 2.8e-30 136.0 102 65.7
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 1.8e-29 133.3 178 43.8
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 1.8e-29 133.3 169 45.0
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 6.9e-29 131.3 241 39.0
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 9.0e-29 131.0 168 45.2
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 2.0e-28 129.8 128 57.0
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.6e-28 129.4 110 63.6
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.0e-27 127.5 106 81.1
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 1.7e-27 126.7 106 60.4
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 2.2e-27 126.3 106 79.2
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 2.9e-27 125.9 174 51.7
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.5e-26 122.9 131 52.7
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 2.1e-25 119.8 112 57.1
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 3.6e-25 119.0 107 57.0
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 4.6e-25 118.6 166 44.6
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 6.1e-25 118.2 104 60.6
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.0e-24 117.5 173 45.7
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 5.1e-24 115.2 115 51.3
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 1.7e-22 110.2 175 38.3
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 8.2e-22 107.8 109 61.5
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 1.4e-21 107.1 116 54.3
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 3.4e-20 102.4 184 37.0
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 5.1e-16 88.6 80 58.8
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 1.4e-13 80.5 166 33.1
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 2.4e-13 79.7 96 51.0
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 2.4e-13 79.7 103 48.5
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 2.4e-13 79.7 103 48.5
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 2.5e-10 69.7 76 50.0
Oeu039385.1 Olea europaea HOM05D002276 ORTHO05D002381 3.3e-07 59.3 66 83.3
Nitab4.5_0001671g0020 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.7e-06 57.0 62 54.8
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 4.8e-06 55.5 103 36.9
Actinidia31636 Actinidia chinensis HOM05D004876 ORTHO05D005488 8.2e-06 54.7 110 35.5
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 8.2e-06 54.7 111 28.8


User provided reference genes

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