Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.6e-115 419.5 211 100.0
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 9.9e-70 267.3 220 65.9
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 3.5e-67 258.8 215 65.6
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.3e-61 240.4 209 65.1
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.3e-61 240.4 214 66.4
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.2e-59 233.8 210 63.3
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.2e-59 233.8 216 61.1
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 6.7e-58 228.0 208 64.9
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 6.7e-58 228.0 208 64.9
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 6.7e-58 228.0 207 63.3
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 5.6e-57 224.9 217 58.5
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 7.4e-57 224.6 224 57.6
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.6e-56 223.4 215 61.9
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.6e-56 223.4 205 62.0
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 2.4e-55 219.5 214 58.9
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 5.3e-55 218.4 208 58.2
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 6.9e-55 218.0 213 57.7
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 6.9e-55 218.0 213 57.7
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-54 217.2 213 57.7
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 3.4e-54 215.7 216 57.4
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.4e-54 215.7 211 55.0
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 7.6e-54 214.5 210 57.6
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 3.8e-53 212.2 226 54.9
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 6.5e-53 211.5 213 57.3
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.1e-52 210.7 210 57.6
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.4e-52 210.3 215 58.6
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.9e-52 209.9 225 55.6
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 3.2e-52 209.1 219 56.6
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 4.2e-52 208.8 217 57.6
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.2e-52 208.8 217 57.6
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 4.2e-52 208.8 206 57.3
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 5.5e-52 208.4 211 55.5
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 5.5e-52 208.4 213 56.3
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.1e-52 208.0 208 56.2
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 9.3e-52 207.6 208 58.7
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.2e-51 207.2 218 54.6
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.2e-51 207.2 218 57.8
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.2e-51 207.2 202 56.9
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.6e-51 206.8 217 57.1
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 2.1e-51 206.5 216 56.0
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 7.9e-51 204.5 218 55.5
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 7.9e-51 204.5 217 57.1
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.0e-50 204.1 213 52.1
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.0e-50 204.1 221 57.0
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-50 203.8 203 59.1
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.8e-50 203.4 212 53.3
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.8e-50 203.4 211 52.1
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 3.9e-50 202.2 215 55.3
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 5.1e-50 201.8 209 56.9
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 6.7e-50 201.4 219 55.3
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 6.7e-50 201.4 213 52.6
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 6.7e-50 201.4 215 54.9
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.5e-49 200.3 212 58.5
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.5e-49 200.3 209 54.1
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.9e-49 199.9 208 53.8
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.9e-49 199.9 218 55.5
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 2.5e-49 199.5 207 54.6
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 4.3e-49 198.7 216 51.9
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 7.4e-49 198.0 205 55.1
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 7.4e-49 198.0 222 54.1
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.6e-48 196.8 206 51.9
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.8e-48 196.1 207 52.2
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 3.7e-48 195.7 208 56.2
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 6.2e-48 194.9 212 51.9
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 6.2e-48 194.9 206 53.9
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 8.2e-48 194.5 213 52.1
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 8.2e-48 194.5 217 51.2
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 1.4e-47 193.7 218 52.3
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.4e-47 193.7 221 56.1
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.4e-47 193.7 210 56.7
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.8e-47 193.4 207 57.0
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.8e-47 193.4 215 52.1
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 3.1e-47 192.6 210 52.4
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 3.1e-47 192.6 176 59.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 3.1e-47 192.6 220 52.3
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 4.1e-47 192.2 207 51.7
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 4.1e-47 192.2 232 48.3
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 9.0e-47 191.0 201 54.7
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 2.6e-46 189.5 208 56.2
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 2.6e-46 189.5 210 51.0
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.6e-46 189.5 222 50.5
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 2.6e-46 189.5 208 52.9
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 3.4e-46 189.1 225 50.2
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 7.6e-46 188.0 219 51.6
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.7e-45 186.8 201 53.7
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 2.2e-45 186.4 207 50.7
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 3.8e-45 185.7 209 55.0
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.9e-44 183.3 225 50.7
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 4.2e-44 182.2 202 54.5
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 5.5e-44 181.8 221 50.7
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.5e-44 181.8 194 57.2
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 7.1e-44 181.4 218 50.5
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.6e-43 180.3 219 51.6
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.6e-43 180.3 217 51.6
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.1e-43 179.9 208 50.0
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 3.5e-43 179.1 207 49.8
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.0e-42 177.6 207 51.2
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.0e-42 177.6 207 51.2
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.3e-42 177.2 214 47.2
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.3e-42 177.2 213 50.2
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.8e-42 176.8 216 51.9
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 5.1e-42 175.3 166 57.2
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 6.7e-42 174.9 218 48.2
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.5e-41 173.7 197 52.3
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.9e-41 173.3 222 48.2
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 9.7e-41 171.0 218 45.9
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 4.8e-40 168.7 223 49.8
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.1e-39 167.5 157 59.2
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.4e-39 167.2 152 55.9
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 9.0e-39 164.5 160 60.6
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.3e-37 160.6 197 50.8
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.7e-37 160.2 189 51.3
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.2e-37 159.8 217 43.3
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 4.2e-36 155.6 198 46.5
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 2.1e-35 153.3 211 45.0
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.8e-34 150.2 190 50.5
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.8e-34 150.2 211 45.0
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.8e-32 142.9 210 41.4
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 8.2e-32 141.4 225 40.4
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 1.4e-31 140.6 212 42.9
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 4.1e-31 139.0 223 39.5
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.2e-30 137.5 175 47.4
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.0e-29 134.4 135 54.1
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 1.0e-29 134.4 144 54.9
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 3.8e-29 132.5 207 40.6
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 9.4e-28 127.9 197 43.1
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 1.6e-27 127.1 125 56.0
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 2.1e-27 126.7 140 53.6
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.9e-26 122.5 124 55.6
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.1e-26 122.1 207 41.1
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 2.6e-25 119.8 197 37.6
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 2.6e-25 119.8 143 44.8
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.3e-24 117.5 121 56.2
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.3e-24 117.5 190 38.9
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 2.4e-23 113.2 102 56.9
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 5.9e-22 108.6 107 50.5
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.3e-21 107.5 97 50.5
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.7e-21 107.1 120 44.2
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.9e-20 103.6 201 36.8
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.2e-20 102.8 123 52.0
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.2e-20 102.4 121 51.2
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 6.1e-19 98.6 89 49.4
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.8e-18 97.1 90 52.2
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.3e-18 96.7 146 38.4
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 6.7e-18 95.1 208 35.1
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 4.4e-17 92.4 87 50.6
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.8e-16 89.7 139 40.3
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 7.0e-15 85.1 111 52.3
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.6e-14 84.0 102 45.1
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.6e-14 83.2 124 38.7
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.7e-13 80.5 108 50.9
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 1.1e-12 77.8 93 45.2
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 8.8e-10 68.2 117 39.3
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 4.4e-09 65.9 94 50.0
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 7.5e-09 65.1 74 47.3
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 2.4e-07 60.1 77 44.2
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 7.0e-07 58.5 175 35.4


User provided reference genes

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