Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 1.5e-127 459.5 233 100.0
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 7.3e-106 387.5 234 84.2
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 2.1e-97 359.4 214 84.6
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 1.4e-93 346.7 228 76.8
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 5.4e-93 344.7 229 75.1
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 1.7e-91 339.7 229 71.2
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 7.3e-90 334.3 229 72.1
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 1.2e-89 333.6 231 72.7
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 1.6e-89 333.2 228 74.6
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 2.8e-89 332.4 229 72.9
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 2.8e-89 332.4 229 71.6
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 4.7e-89 331.6 245 69.4
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 4.7e-89 331.6 234 70.1
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 6.2e-89 331.3 233 70.4
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 8.1e-89 330.9 228 71.1
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 1.1e-88 330.5 228 72.8
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 1.1e-88 330.5 228 73.2
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 4.0e-88 328.6 229 70.3
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 6.8e-88 327.8 233 67.8
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 2.6e-87 325.9 229 73.8
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 3.4e-87 325.5 234 69.2
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 7.5e-87 324.3 234 68.8
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 1.3e-86 323.6 228 71.1
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 1.7e-86 323.2 227 71.8
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 6.4e-86 321.2 229 69.9
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 4.1e-85 318.5 234 67.9
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 7.1e-85 317.8 229 69.9
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 2.7e-84 315.8 229 68.1
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 7.8e-84 314.3 229 69.4
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 1.0e-83 313.9 229 69.4
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 1.3e-83 313.5 250 63.6
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 8.6e-83 310.8 230 67.8
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 8.6e-83 310.8 227 67.8
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 4.3e-82 308.5 231 67.5
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 1.6e-81 306.6 230 67.4
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 2.1e-81 306.2 231 65.4
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 2.8e-81 305.8 231 65.8
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 6.2e-81 304.7 229 67.2
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 1.1e-80 303.9 229 65.9
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.8e-80 303.1 231 65.4
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 3.1e-80 302.4 228 67.1
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 3.1e-80 302.4 231 65.4
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 4.0e-80 302.0 231 65.8
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 4.0e-80 302.0 228 66.7
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 5.2e-80 301.6 230 66.1
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 5.2e-80 301.6 229 62.9
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 6.8e-80 301.2 229 65.5
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.9e-80 300.8 227 63.0
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 1.2e-79 300.4 228 66.2
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 2.0e-79 299.7 237 65.0
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.6e-79 299.3 233 64.4
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.6e-79 299.3 229 62.9
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 3.4e-79 298.9 228 66.2
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 3.4e-79 298.9 231 64.1
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 7.6e-79 297.7 228 65.8
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 9.9e-79 297.4 233 62.7
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 9.9e-79 297.4 229 64.2
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 1.3e-78 297.0 228 66.2
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 2.9e-78 295.8 229 63.8
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 6.4e-78 294.7 228 65.4
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 6.4e-78 294.7 229 62.4
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 6.4e-78 294.7 229 63.3
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 1.9e-77 293.1 230 64.8
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 3.2e-77 292.4 228 64.5
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 4.1e-77 292.0 233 62.2
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 5.4e-77 291.6 233 63.1
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 5.4e-77 291.6 231 62.8
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 2.1e-76 289.7 228 63.6
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 2.7e-76 289.3 228 66.2
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 3.5e-76 288.9 231 61.9
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 3.5e-76 288.9 233 63.9
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 4.6e-76 288.5 230 63.0
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 7.8e-76 287.7 228 64.9
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 3.9e-75 285.4 228 64.5
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 2.5e-74 282.7 230 63.9
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 1.6e-73 280.0 230 62.6
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 2.8e-73 279.3 227 63.4
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 1.5e-71 273.5 236 59.3
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 5.8e-71 271.6 229 61.6
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 2.7e-68 262.7 233 57.5
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.5e-68 262.3 247 57.5
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.9e-67 258.8 247 56.7
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 5.1e-67 258.5 231 57.6
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.7e-67 257.7 247 56.7
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 2.5e-66 256.1 229 61.6
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 2.6e-63 246.1 237 58.6
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 2.2e-62 243.0 165 72.1
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 2.2e-62 243.0 237 58.2
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 1.1e-61 240.7 183 66.1
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 2.4e-61 239.6 229 55.9
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 9.3e-61 237.7 242 51.7
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 2.7e-60 236.1 178 65.7
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 3.0e-59 232.6 147 77.6
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 6.7e-59 231.5 231 54.1
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 8.7e-59 231.1 165 71.5
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 9.6e-58 227.6 165 68.5
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 6.2e-57 224.9 233 50.6
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 8.1e-57 224.6 181 63.0
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 2.4e-56 223.0 229 50.7
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 4.0e-56 222.2 227 51.1
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 3.4e-55 219.2 182 62.1
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 3.4e-55 219.2 230 51.3
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 7.6e-55 218.0 165 63.0
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 5.8e-47 191.8 178 56.7
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 8.4e-46 188.0 177 56.5
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 3.9e-43 179.1 143 60.8
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 5.1e-43 178.7 193 50.3
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 5.3e-40 168.7 112 76.8
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 3.4e-39 166.0 122 67.2
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 1.3e-38 164.1 122 66.4
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 2.5e-37 159.8 116 69.0
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 2.3e-35 153.3 125 60.8
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 1.4e-29 134.0 154 50.0
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.6e-28 130.6 106 61.3
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 8.8e-27 124.8 152 48.0
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 2.6e-26 123.2 230 37.0
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.2e-15 87.8 63 63.5
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 3.5e-15 86.3 111 42.3
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 3.5e-15 86.3 111 42.3
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 2.5e-13 80.1 51 74.5
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 2.5e-13 80.1 51 74.5
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 1.7e-06 57.4 197 30.5
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 2.2e-06 57.0 193 31.1
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 5.0e-06 55.8 55 56.4


User provided reference genes

Program Settings