Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0458791 Helianthus annuus HOM05D000475 ORTHO05D000343 1.3e-120 436.4 224 100.0
HanXRQChr14g0458941 Helianthus annuus HOM05D000475 ORTHO05D000343 1.4e-37 160.6 349 36.7
TWI77G0406 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 8.5e-19 98.2 262 32.1
GSVIVG01030266001 Vitis vinifera HOM05D000475 ORTHO05D000343 1.0e-16 91.3 226 32.3
ECA238G4627 Erigeron canadensis HOM05D000475 ORTHO05D000343 1.3e-16 90.9 200 34.5
TAR633G1711 Trochodendron aralioides HOM05D000475 ORTHO05D000343 3.0e-16 89.7 262 33.6
ECA238G4258 Erigeron canadensis HOM05D000475 ORTHO05D000343 3.3e-15 86.3 146 41.1
Manes.09G112000 Manihot esculenta HOM05D000475 ORTHO05D000343 7.4e-15 85.1 251 29.1
Actinidia11548 Actinidia chinensis HOM05D000475 ORTHO05D000343 3.7e-14 82.8 253 29.6
Lsat_1_v5_gn_2_125761 Lactuca sativa HOM05D000475 ORTHO05D000343 6.3e-14 82.0 148 39.9
Aa31LG1G23280 Aethionema arabicum HOM05D000475 ORTHO05D000343 8.2e-14 81.6 248 29.4
Hma1.2p1_0501F.1_g167350 Hydrangea macrophylla HOM05D000475 ORTHO05D000343 2.4e-13 80.1 257 30.0
PGR031G2393 Punica granatum HOM05D000475 ORTHO05D000343 3.1e-13 79.7 231 29.4
Cc02_g05890 Coffea canephora HOM05D000475 ORTHO05D000343 9.0e-13 78.2 223 30.9
Gohir.A09G168100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 2.0e-12 77.0 292 25.7
Rhsim09G0080000 Rhododendron simsii HOM05D000475 ORTHO05D000343 2.0e-12 77.0 240 30.8
AL6G10390 Arabidopsis lyrata HOM05D000475 ORTHO05D000343 2.6e-12 76.6 250 30.0
Gohir.D09G164100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 4.5e-12 75.9 292 25.7
GSVIVG01032736001 Vitis vinifera HOM05D000475 ORTHO05D000343 4.5e-12 75.9 69 58.0
Thhalv10012920m.g Eutrema salsugineum HOM05D000475 ORTHO05D000343 7.7e-12 75.1 252 29.8
Gorai.006G185700 Gossypium raimondii HOM05D000475 ORTHO05D000343 1.3e-11 74.3 292 26.0
Potri.016G127600 Populus trichocarpa HOM05D000475 ORTHO05D000343 1.3e-11 74.3 258 26.7
Haze_17294 Corylus avellana HOM05D000475 ORTHO05D000343 2.2e-11 73.6 106 43.4
Sed0026269 Sechium edule HOM05D000475 ORTHO05D000343 3.8e-11 72.8 242 29.3
Thecc.09G230200 Theobroma cacao HOM05D000475 ORTHO05D000343 5.0e-11 72.4 129 41.1
CSS0035168 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 8.5e-11 71.6 157 33.8
Dinv21798 Davidia involucrata HOM05D000475 ORTHO05D000343 8.5e-11 71.6 96 41.7
Lj1A962T107 Lonicera japonica HOM05D000475 ORTHO05D000343 1.1e-10 71.2 148 35.1
CARHR212020 Cardamine hirsuta HOM05D000475 ORTHO05D000343 1.4e-10 70.9 249 28.5
Sopen10g027970 Solanum pennellii HOM05D000475 ORTHO05D000343 1.4e-10 70.9 232 27.6
C09p74700 Brassica napus HOM05D000475 ORTHO05D000343 1.9e-10 70.5 223 30.9
Duzib093G0789 Durio zibethinus HOM05D000475 ORTHO05D000343 1.9e-10 70.5 85 44.7
BcaC06g31981 Brassica carinata HOM05D000475 ORTHO05D000343 2.5e-10 70.1 232 28.9
AUR62022960 Chenopodium quinoa HOM05D000475 ORTHO05D000343 2.5e-10 70.1 87 42.5
COL.COLO4_24866 Corchorus olitorius HOM05D000475 ORTHO05D000343 2.5e-10 70.1 138 37.0
Haze_17377 Corylus avellana HOM05D000475 ORTHO05D000343 2.5e-10 70.1 106 40.6
Phvul.008G091800 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 2.5e-10 70.1 236 27.5
Thecc.05G006500 Theobroma cacao HOM05D000475 ORTHO05D000343 3.2e-10 69.7 286 27.6
TWI63G0323 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 3.2e-10 69.7 92 47.8
vmacro06936 Vaccinium macrocarpon HOM05D000475 ORTHO05D000343 4.2e-10 69.3 147 33.3
Solyc10g076330.3 Solanum lycopersicum HOM05D000475 ORTHO05D000343 5.5e-10 68.9 232 27.2
PGSC0003DMG400011621 Solanum tuberosum HOM05D000475 ORTHO05D000343 5.5e-10 68.9 249 30.1
Carub.0006s0017 Capsella rubella HOM05D000475 ORTHO05D000343 7.2e-10 68.6 255 29.4
Sabra16G0130800 Salix brachista HOM05D000475 ORTHO05D000343 7.2e-10 68.6 247 29.1
Sp6g40920 Schrenkiella parvula HOM05D000475 ORTHO05D000343 7.2e-10 68.6 254 28.3
SGA_v2.0_scaffold60G20952 Striga asiatica HOM05D000475 ORTHO05D000343 7.2e-10 68.6 294 24.5
Sed0000701 Sechium edule HOM05D000475 ORTHO05D000343 9.4e-10 68.2 237 28.7
PSO017G1695 Papaver somniferum HOM05D000475 ORTHO05D000343 1.2e-09 67.8 57 54.4
QL08p064006 Quercus lobata HOM05D000475 ORTHO05D000343 1.2e-09 67.8 65 55.4
Cfa001257 Carpinus fangiana HOM05D000475 ORTHO05D000343 1.6e-09 67.4 73 47.9
CiPaw.02G196700 Carya illinoinensis HOM05D000475 ORTHO05D000343 1.6e-09 67.4 65 53.8
CiPaw.10G160700 Carya illinoinensis HOM05D000475 ORTHO05D000343 1.6e-09 67.4 243 28.4
Nitab4.5_0001703g0060 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.6e-09 67.4 242 27.7
Nitab4.5_0000047g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 2.7e-09 66.6 253 27.3
Medtr4g013760 Medicago truncatula HOM05D000475 ORTHO05D000343 3.6e-09 66.2 91 37.4
SGA_v2.0_scaffold85G26679 Striga asiatica HOM05D000475 ORTHO05D000343 3.6e-09 66.2 259 26.6
DCAR_028563 Daucus carota HOM05D000475 ORTHO05D000343 4.6e-09 65.9 129 34.9
Glyma.18G207500 Glycine max HOM05D000475 ORTHO05D000343 4.6e-09 65.9 249 25.7
Peaxi162Scf00264g00858 Petunia axillaris HOM05D000001 ORTHO05D000003 4.6e-09 65.9 261 28.0
Aqoxy3G02479 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 6.1e-09 65.5 79 41.8
ClCG11G005960 Citrullus lanatus HOM05D000475 ORTHO05D000343 6.1e-09 65.5 100 37.0
BcaNung03297 Brassica carinata HOM05D000475 ORTHO05D000343 7.9e-09 65.1 212 30.2
BolC9t60202H Brassica oleracea HOM05D000475 ORTHO05D000343 7.9e-09 65.1 212 30.2
CANSAT56G0883 Cannabis sativa HOM05D000475 ORTHO05D000343 7.9e-09 65.1 116 37.9
Nn2g14564 Nelumbo nucifera HOM05D000475 ORTHO05D000343 7.9e-09 65.1 254 30.3
Phvul.008G092000 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 7.9e-09 65.1 247 25.9
ClCG10G022460 Citrullus lanatus HOM05D000475 ORTHO05D000343 1.0e-08 64.7 246 30.5
CsaV3_3G033400 Cucumis sativus L. HOM05D000475 ORTHO05D000343 1.0e-08 64.7 236 27.1
arahy.Tifrunner.gnm1.ann1.RFF9M1 Arachis hypogaea HOM05D000475 ORTHO05D000343 1.4e-08 64.3 255 26.7
CAN.G629.5 Capsicum annuum HOM05D000475 ORTHO05D000343 1.4e-08 64.3 252 27.8
Lalb_Chr23g0277141 Lupinus albus HOM05D000475 ORTHO05D000343 1.4e-08 64.3 59 55.9
TPR.G5204 Trifolium pratense HOM05D000475 ORTHO05D000343 1.4e-08 64.3 91 36.3
AT5G01660 Arabidopsis thaliana HOM05D000475 ORTHO05D000343 1.8e-08 63.9 249 29.3
Dinv35407 Davidia involucrata HOM05D000475 ORTHO05D000343 2.3e-08 63.5 249 27.3
PSO017G3055 Papaver somniferum HOM05D000475 ORTHO05D000343 2.3e-08 63.5 54 51.9
PSO541G4842 Papaver somniferum HOM05D000475 ORTHO05D000343 2.3e-08 63.5 53 54.7
PSO675G0135 Papaver somniferum HOM05D000475 ORTHO05D000343 2.3e-08 63.5 53 54.7
MELO3C008322.2 Cucumis melo HOM05D000475 ORTHO05D000343 3.0e-08 63.2 126 31.7
Oeu001413.1 Olea europaea HOM05D000475 ORTHO05D000343 3.0e-08 63.2 53 52.8
BraA10t45406Z Brassica rapa HOM05D000475 ORTHO05D000343 3.9e-08 62.8 223 27.4
PGSC0003DMG400011862 Solanum tuberosum HOM05D000475 ORTHO05D000343 3.9e-08 62.8 237 27.0
Lj4g0019173 Lotus japonicus HOM05D000475 ORTHO05D000343 5.1e-08 62.4 69 44.9
Sopen09g008410 Solanum pennellii HOM05D000475 ORTHO05D000343 5.1e-08 62.4 246 28.5
BolC1t05339H Brassica oleracea HOM05D000475 ORTHO05D000343 6.7e-08 62.0 59 52.5
Solyc09g015120.4 Solanum lycopersicum HOM05D000475 ORTHO05D000343 6.7e-08 62.0 246 28.9
CSS0010934 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 8.8e-08 61.6 232 28.0
AUR62012320 Chenopodium quinoa HOM05D000475 ORTHO05D000343 8.8e-08 61.6 163 29.4
AUR62030756 Chenopodium quinoa HOM05D000475 ORTHO05D000343 8.8e-08 61.6 59 50.8
Migut.F00623 Erythranthe guttata HOM05D000475 ORTHO05D000343 8.8e-08 61.6 295 28.1
Peaxi162Scf00284g00231 Petunia axillaris HOM05D000475 ORTHO05D000343 8.8e-08 61.6 52 55.8
Solyc06g050610.3 Solanum lycopersicum HOM05D000475 ORTHO05D000343 8.8e-08 61.6 55 56.4
TWI38G2109 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 8.8e-08 61.6 66 50.0
ATR0594G100 Amborella trichopoda HOM05D000475 ORTHO05D000343 1.1e-07 61.2 63 41.3
A10p33760 Brassica napus HOM05D000475 ORTHO05D000343 1.1e-07 61.2 222 27.9
BraA01t04207Z Brassica rapa HOM05D000475 ORTHO05D000343 1.1e-07 61.2 52 55.8
Nitab4.5_0000355g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.1e-07 61.2 264 26.1
THA.LOC104816526 Tarenaya hassleriana HOM05D000475 ORTHO05D000343 1.1e-07 61.2 62 50.0
Migut.F00625 Erythranthe guttata HOM05D000475 ORTHO05D000343 1.5e-07 60.8 201 29.9
Prupe.6G285100 Prunus persica HOM05D000475 ORTHO05D000343 1.5e-07 60.8 269 26.4
Sc11g0005460 Simmondsia chinensis HOM05D000475 ORTHO05D000343 1.5e-07 60.8 73 45.2
FAN14G2255 Fragaria x ananassa HOM05D000475 ORTHO05D000343 2.0e-07 60.5 68 42.6
FAN14G2406 Fragaria x ananassa HOM05D000475 ORTHO05D000343 2.0e-07 60.5 68 42.6
Lalb_Chr01g0023371 Lupinus albus HOM05D000475 ORTHO05D000343 2.0e-07 60.5 259 28.2
Lalb_Chr03g0043501 Lupinus albus HOM05D000475 ORTHO05D000343 2.0e-07 60.5 96 39.6
Nitab4.5_0001106g0120 Nicotiana tabacum HOM05D000475 ORTHO05D000343 2.0e-07 60.5 76 44.7
Aqoxy3G02296 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 2.6e-07 60.1 63 46.0
Dinv12173 Davidia involucrata HOM05D000475 ORTHO05D000343 2.6e-07 60.1 85 41.2
MD04G1166900 Malus domestica HOM05D000475 ORTHO05D000343 2.6e-07 60.1 106 32.1
Lj2A66G60 Lonicera japonica HOM05D000475 ORTHO05D000343 3.3e-07 59.7 249 28.1
Nitab4.5_0004057g0020 Nicotiana tabacum HOM05D000475 ORTHO05D000343 3.3e-07 59.7 256 25.4
Potri.008G074200 Populus trichocarpa HOM05D000475 ORTHO05D000343 3.3e-07 59.7 305 25.2
VMungo1383G1412 Vigna mungo HOM05D000475 ORTHO05D000343 3.3e-07 59.7 109 33.9
MELO3C009131.2 Cucumis melo HOM05D000475 ORTHO05D000343 4.4e-07 59.3 224 25.9
Eucgr.A00623 Eucalyptus grandis HOM05D000475 ORTHO05D000343 4.4e-07 59.3 50 58.0
FAN02G4485 Fragaria x ananassa HOM05D000475 ORTHO05D000343 4.4e-07 59.3 68 42.6
HanXRQChr01g0007041 Helianthus annuus HOM05D000475 ORTHO05D000343 4.4e-07 59.3 231 25.1
Sopen10g027980 Solanum pennellii HOM05D001655 ORTHO05D000343 4.4e-07 59.3 237 25.7
arahy.Tifrunner.gnm1.ann1.E8CB8M Arachis hypogaea HOM05D000475 ORTHO05D000343 5.7e-07 58.9 259 26.3
Eucgr.G03101 Eucalyptus grandis HOM05D000475 ORTHO05D011666 5.7e-07 58.9 61 47.5
FvH4_6g10590 Fragaria vesca HOM05D000475 ORTHO05D000343 5.7e-07 58.9 68 41.2
Rhsim03G0148100 Rhododendron simsii HOM05D000475 ORTHO05D014148 5.7e-07 58.9 57 50.9
SalBow3G3710 Salvia bowleyana HOM05D000475 ORTHO05D000343 7.4e-07 58.5 116 32.8
Sopen06g016160 Solanum pennellii HOM05D000475 ORTHO05D000343 7.4e-07 58.5 55 54.5
Atru.chr8.2341 Acer truncatum HOM05D000475 ORTHO05D000343 9.7e-07 58.2 80 42.5
CARHR085590 Cardamine hirsuta HOM05D000475 ORTHO05D000343 9.7e-07 58.2 55 52.7
QL07p033892 Quercus lobata HOM05D000475 ORTHO05D000343 9.7e-07 58.2 279 25.8
AUR62036403 Chenopodium quinoa HOM05D000475 ORTHO05D000343 1.3e-06 57.8 53 49.1
Ca_26194_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 1.3e-06 57.8 54 48.1
Cc06_g00720 Coffea canephora HOM05D000475 ORTHO05D000343 1.3e-06 57.8 238 24.8
Medtr1g018690 Medicago truncatula HOM05D000475 ORTHO05D000343 1.3e-06 57.8 55 47.3
BcaC06g31955 Brassica carinata HOM05D000389 ORTHO05D000287 1.7e-06 57.4 200 29.0
Thhalv10020540m.g Eutrema salsugineum HOM05D000475 ORTHO05D000343 1.7e-06 57.4 174 26.4
TPR.G4429 Trifolium pratense HOM05D000475 ORTHO05D000343 1.7e-06 57.4 64 43.8
arahy.Tifrunner.gnm1.ann1.LAF8WM Arachis hypogaea HOM05D000475 ORTHO05D000343 2.2e-06 57.0 255 26.7
arahy.Tifrunner.gnm1.ann1.VSZX8Y Arachis hypogaea HOM05D000475 ORTHO05D000343 2.2e-06 57.0 255 26.7
Cpa.g.sc5.240 Carica papaya HOM05D000475 ORTHO05D000343 2.2e-06 57.0 93 40.9
Cfa017111 Carpinus fangiana HOM05D000475 ORTHO05D000343 2.2e-06 57.0 50 54.0
ECA248G1682 Erigeron canadensis HOM05D000475 ORTHO05D000343 2.2e-06 57.0 228 24.6
PSO478G1812 Papaver somniferum HOM05D000475 ORTHO05D000343 2.2e-06 57.0 152 28.9
TPR.G35832 Trifolium pratense HOM05D000475 ORTHO05D000343 2.2e-06 57.0 51 49.0
EL10Ac2g04912 Beta vulgaris HOM05D000475 ORTHO05D000343 2.8e-06 56.6 58 46.6
BcaC09g48148 Brassica carinata HOM05D000475 ORTHO05D000343 2.8e-06 56.6 193 31.6
MD12G1180200 Malus domestica HOM05D000475 ORTHO05D000343 3.7e-06 56.2 258 24.4
Ah.12g059110 Amaranthus hybridus HOM05D000475 ORTHO05D000343 4.8e-06 55.8 246 22.8
Lj2g0010150 Lotus japonicus HOM05D000475 ORTHO05D000343 4.8e-06 55.8 242 26.0
Zm00001eb336280 Zea mays HOM05D000475 ORTHO05D000343 4.8e-06 55.8 58 43.1
Actinidia33894 Actinidia chinensis HOM05D000475 ORTHO05D000343 6.3e-06 55.5 369 24.9
C05p57060 Brassica napus HOM05D000475 ORTHO05D000343 8.2e-06 55.1 52 53.8
BolC5t34369H Brassica oleracea HOM05D000475 ORTHO05D000343 8.2e-06 55.1 52 53.8
DCAR_023993 Daucus carota HOM05D000475 ORTHO05D000343 8.2e-06 55.1 192 27.6
Nitab4.5_0002854g0040 Nicotiana tabacum HOM05D000475 ORTHO05D000343 8.2e-06 55.1 76 44.7


User provided reference genes

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