Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 3.5e-118 428.3 221 100.0
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 6.7e-93 344.4 211 82.5
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 6.9e-90 334.3 198 83.3
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 7.6e-89 330.9 235 74.5
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.7e-88 329.7 212 77.4
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.2e-88 329.3 210 75.7
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 5.0e-88 328.2 208 78.4
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.1e-87 327.0 202 79.7
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 1.9e-87 326.2 201 82.1
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 2.5e-87 325.9 199 80.4
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.5e-87 325.9 210 74.8
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.5e-87 325.9 210 74.8
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.5e-87 325.9 202 79.2
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 7.2e-87 324.3 198 82.3
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.6e-86 323.2 203 78.8
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 3.6e-86 322.0 212 75.9
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 6.1e-86 321.2 204 76.5
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 7.9e-86 320.9 204 79.4
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.3e-85 320.1 212 75.5
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.0e-85 318.9 213 75.6
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 5.1e-85 318.2 217 75.1
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 6.7e-85 317.8 204 76.0
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.1e-84 317.0 206 76.7
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.9e-84 316.2 218 75.2
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.9e-84 316.2 210 75.7
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 4.3e-84 315.1 213 73.2
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 4.3e-84 315.1 209 75.1
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 5.7e-84 314.7 206 77.7
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 5.7e-84 314.7 212 74.5
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 5.7e-84 314.7 213 75.6
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 5.7e-84 314.7 211 75.8
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 7.4e-84 314.3 201 77.6
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 7.4e-84 314.3 213 73.7
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 9.7e-84 313.9 208 76.0
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 9.7e-84 313.9 214 73.8
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 1.3e-83 313.5 215 74.0
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.3e-83 313.5 212 75.9
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.6e-83 313.2 212 75.9
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.6e-83 313.2 212 75.9
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.2e-83 312.8 233 70.8
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 2.8e-83 312.4 212 75.9
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.7e-83 312.0 212 75.9
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 6.3e-83 311.2 206 76.2
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 8.2e-83 310.8 216 71.8
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 8.2e-83 310.8 205 74.6
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.1e-82 310.5 198 76.8
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.4e-82 310.1 214 74.8
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.4e-82 310.1 214 74.8
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.4e-82 310.1 198 76.3
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.8e-82 309.7 214 72.9
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.8e-82 309.7 213 74.2
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.8e-82 309.7 212 74.1
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 2.4e-82 309.3 211 74.9
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 2.4e-82 309.3 211 74.9
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.4e-82 309.3 198 76.8
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 2.4e-82 309.3 211 74.9
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 6.9e-82 307.8 220 71.4
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.5e-81 306.6 207 74.4
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 7.7e-81 304.3 216 72.7
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 6.5e-80 301.2 203 73.4
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.1e-79 300.4 204 71.1
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.4e-79 300.1 203 73.4
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.9e-79 299.7 214 72.0
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 3.2e-79 298.9 209 72.7
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.2e-79 298.9 210 70.5
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.2e-79 298.5 200 75.5
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 5.5e-79 298.1 205 71.7
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 7.2e-79 297.7 196 74.5
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 7.2e-79 297.7 192 75.0
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 9.4e-79 297.4 210 73.8
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 2.1e-78 296.2 195 75.4
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 2.7e-78 295.8 192 75.5
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 7.9e-78 294.3 197 73.6
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.4e-77 293.5 192 74.5
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.8e-77 293.1 216 67.6
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 2.3e-77 292.7 192 75.0
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 6.7e-77 291.2 211 67.3
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 3.3e-76 288.9 211 69.7
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 3.7e-75 285.4 203 72.9
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 2.4e-74 282.7 218 66.5
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 3.1e-74 282.3 207 69.6
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 4.5e-73 278.5 206 67.5
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 5.9e-73 278.1 198 69.7
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 2.2e-72 276.2 202 67.8
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 2.2e-72 276.2 207 66.7
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 2.9e-72 275.8 202 68.8
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.0e-72 275.0 204 66.7
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 6.5e-72 274.6 202 68.3
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 8.5e-72 274.2 202 69.3
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.1e-71 273.9 211 65.4
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.4e-71 273.5 193 71.0
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.9e-71 273.1 208 65.4
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 2.5e-71 272.7 205 69.3
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 5.5e-71 271.6 202 69.3
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 7.2e-71 271.2 205 69.3
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 7.2e-71 271.2 203 66.5
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.2e-70 270.4 205 65.9
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.2e-70 270.4 219 62.6
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 2.1e-70 269.6 201 66.7
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 3.6e-70 268.9 211 64.5
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 4.7e-70 268.5 202 68.8
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 4.7e-70 268.5 202 68.8
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 7.9e-70 267.7 202 68.8
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 7.9e-70 267.7 202 68.8
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 7.9e-70 267.7 202 68.8
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 7.9e-70 267.7 208 63.9
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 1.0e-69 267.3 202 68.8
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.4e-69 266.9 202 68.8
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 2.3e-69 266.2 202 68.3
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 3.0e-69 265.8 202 67.8
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 3.0e-69 265.8 202 68.3
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 3.9e-69 265.4 202 67.8
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 5.2e-69 265.0 199 70.9
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 6.7e-69 264.6 202 67.8
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.5e-68 263.5 203 68.0
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 2.0e-68 263.1 178 72.5
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 2.0e-68 263.1 199 70.4
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 2.6e-68 262.7 205 64.4
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 3.7e-67 258.8 191 70.7
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.4e-66 256.9 192 65.1
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.1e-66 255.4 187 70.6
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 7.0e-66 254.6 209 62.7
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 5.0e-64 248.4 142 84.5
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.1e-62 243.0 216 61.1
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.7e-59 233.4 195 62.6
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.8e-58 229.9 217 61.8
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.3e-56 223.8 165 69.7
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 2.5e-55 219.5 162 69.1
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.5e-55 219.5 192 56.8
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 3.7e-51 205.7 197 55.8
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 1.6e-49 200.3 123 79.7
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 7.2e-47 191.4 208 54.3
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.0e-45 187.6 120 70.8
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.4e-44 182.2 194 54.6
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 5.4e-42 175.3 123 73.2
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 4.5e-41 172.2 108 73.1
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 2.9e-40 169.5 101 79.2
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 2.5e-39 166.4 104 77.9
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 4.1e-18 95.9 62 74.2
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 1.7e-16 90.5 80 57.5
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 1.3e-08 64.3 142 29.6


User provided reference genes

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