Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1659.8 856 100.0
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1204.1 872 71.9
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1185.2 868 71.3
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1175.2 868 70.6
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1169.8 863 70.3
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1161.4 801 74.9
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1157.9 875 68.8
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1146.3 878 69.7
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1110.9 887 66.5
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1108.6 872 66.5
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1107.8 870 67.1
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1095.1 866 65.7
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1092.4 869 65.8
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1091.6 861 66.2
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1091.6 868 65.7
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1089.3 861 65.5
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1087.8 868 65.6
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1086.6 873 65.8
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1084.7 873 65.6
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1084.3 869 64.4
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1083.6 869 65.9
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1083.6 873 65.5
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1082.0 862 64.7
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1081.6 869 65.0
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1080.9 865 66.5
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1080.5 872 65.1
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1078.9 828 66.5
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1076.6 867 65.5
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1076.2 876 65.4
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 5.9e-312 1074.7 819 68.7
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 5.9e-312 1074.3 870 64.3
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 1.8e-311 1072.4 825 67.4
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 2.3e-311 1072.0 864 63.9
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 2.6e-310 1068.5 877 64.9
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 2.6e-310 1068.5 901 63.5
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.6e-310 1068.5 826 65.5
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 2.6e-310 1068.5 860 64.2
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 1.3e-309 1066.2 841 65.8
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 2.9e-309 1065.1 833 66.5
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 5.4e-308 1060.8 829 66.2
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 2.1e-307 1058.9 825 66.8
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 3.0e-306 1055.0 782 69.3
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 8.6e-306 1053.5 865 64.6
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 1.1e-305 1053.1 860 63.1
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.6e-304 1049.3 830 65.7
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 8.1e-304 1047.0 830 65.4
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 8.1e-304 1047.0 864 63.7
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 8.1e-304 1047.0 790 67.5
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 8.1e-304 1047.0 882 63.6
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 1.4e-303 1046.2 828 64.3
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.4e-303 1046.2 976 60.1
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 1.8e-303 1045.8 864 63.5
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 4.0e-303 1044.6 828 65.0
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 8.9e-303 1043.5 830 65.3
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 8.9e-303 1043.5 925 61.1
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 1.2e-302 1043.1 861 63.4
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 3.4e-302 1041.6 827 65.2
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 1.3e-301 1039.6 850 63.9
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 1.9e-300 1035.8 868 63.8
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 3.2e-300 1035.0 745 70.6
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 4.2e-300 1034.6 829 64.3
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 9.3e-300 1033.5 861 64.0
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 7.8e-299 1030.4 810 65.2
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.0e-298 1030.0 844 63.2
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 6.6e-298 1027.3 864 62.2
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 8.7e-298 1026.9 860 62.4
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 1.5e-297 1026.2 873 62.9
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 1.9e-297 1025.8 957 59.9
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 9.6e-297 1023.5 779 68.0
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 3.6e-296 1021.5 834 65.2
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 2.4e-295 1018.8 839 63.3
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 3.1e-295 1018.5 865 62.4
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 4.0e-295 1018.1 872 62.6
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 1.5e-294 1016.1 820 63.8
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.0e-294 1015.8 864 61.8
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 2.0e-294 1015.8 899 60.5
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 2.6e-294 1015.4 827 63.7
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 5.8e-294 1014.2 831 63.5
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 1.3e-293 1013.1 884 60.6
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 2.2e-293 1012.3 906 60.5
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 1.9e-292 1009.2 767 67.9
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 5.4e-292 1007.7 753 69.1
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 1.0e-290 1003.4 819 62.8
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 1.0e-290 1003.4 819 62.8
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 1.3e-290 1003.0 848 62.1
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.9e-290 1001.5 904 60.8
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 8.7e-290 1000.3 829 63.1
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 9.0e-287 990.3 861 61.6
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 3.4e-286 988.4 824 62.3
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 1.7e-285 986.1 827 62.8
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 1.9e-284 982.6 943 57.2
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 9.6e-281 970.3 791 63.0
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.5e-278 963.0 825 60.5
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 2.6e-278 962.2 821 60.8
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.4e-276 956.4 776 68.8
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 5.5e-276 954.5 822 60.5
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 5.5e-276 954.5 822 60.5
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.6e-275 953.0 820 59.4
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 2.3e-274 949.1 716 68.2
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 6.7e-274 947.6 822 60.0
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 3.7e-272 941.8 859 58.6
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 6.3e-272 941.0 864 58.2
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 6.9e-271 937.6 864 58.2
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 7.2e-268 927.5 821 58.7
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.8e-263 912.9 730 64.0
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 6.9e-263 911.0 841 58.0
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.1e-260 903.7 725 63.4
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 2.5e-260 902.5 1022 51.7
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 1.4e-255 886.7 853 56.4
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 2.0e-254 882.9 717 63.3
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 8.5e-253 877.5 753 62.4
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 7.9e-251 870.9 854 57.1
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 3.9e-250 868.6 854 57.3
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.4e-242 843.6 605 72.7
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 1.3e-232 810.4 691 61.1
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 3.8e-221 772.3 545 71.0
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 4.9e-216 755.4 862 48.6
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 1.2e-206 724.2 859 50.4
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.4e-202 710.7 843 47.2
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 2.0e-201 706.8 552 66.5
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 7.8e-198 694.9 838 47.5
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 8.4e-192 674.9 843 45.6
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.5e-177 627.5 457 70.7
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 4.5e-161 572.8 772 46.1
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 1.2e-158 564.7 410 70.5
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 2.1e-155 553.9 284 98.6
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 9.0e-154 548.5 820 42.0
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 3.9e-149 533.1 523 56.0
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.1e-146 525.0 468 59.8
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 6.5e-144 515.8 480 58.5
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 6.1e-142 509.2 504 57.9
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.0e-137 494.2 476 55.0
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 7.7e-137 492.3 352 69.9
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 6.1e-134 482.6 417 62.8
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 1.8e-133 481.1 396 63.9
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 6.1e-118 429.5 436 53.9
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 3.5e-113 413.7 379 60.9
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.7e-110 403.3 399 53.9
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 4.0e-109 400.2 297 68.0
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 3.0e-101 374.0 297 63.0
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 8.6e-96 355.9 273 64.8
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 1.5e-92 345.1 305 60.7
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 1.7e-83 315.1 336 51.8
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.1e-77 294.3 204 69.6
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 9.6e-71 272.7 252 57.1
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 2.9e-59 234.6 176 64.8
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 9.3e-58 229.6 199 59.3
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 8.1e-54 216.5 168 69.0
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 3.1e-53 214.5 206 54.9
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.0e-43 183.0 130 70.8
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 1.6e-41 175.6 492 30.1
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 5.9e-36 157.1 157 55.4
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 1.0e-32 146.4 247 41.3
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 1.3e-30 139.4 74 94.6
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 5.9e-28 130.6 128 59.4
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 8.8e-24 116.7 109 56.9
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 8.0e-17 93.6 82 62.2
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 3.3e-15 88.2 68 69.1
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 5.7e-15 87.4 94 56.4
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 4.8e-14 84.3 55 78.2
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 4.1e-13 81.3 111 48.6
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 2.9e-11 75.1 92 47.8
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 7.2e-10 70.5 48 75.0
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.6e-07 62.0 88 47.7
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 4.8e-06 57.8 35 77.1
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 4.8e-06 57.8 35 77.1
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 4.8e-06 57.8 35 77.1


User provided reference genes

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