Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 5.6e-181 637.5 327 100.0
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 1.1e-155 553.5 284 98.6
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 7.0e-115 417.9 283 73.9
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.2e-114 417.2 288 74.0
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 1.9e-99 366.7 293 63.5
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.2e-98 364.0 292 64.0
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 2.1e-98 363.2 290 63.4
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 5.1e-97 358.6 291 63.6
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 5.1e-97 358.6 287 62.7
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 2.5e-96 356.3 290 62.8
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 1.2e-95 354.0 291 62.2
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 2.1e-95 353.2 287 61.3
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.6e-95 352.4 288 62.8
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 4.0e-94 349.0 291 62.9
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 2.6e-93 346.3 290 61.7
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 3.4e-93 345.9 293 61.1
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 7.6e-93 344.7 291 60.8
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 1.3e-92 344.0 291 61.2
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 1.3e-92 344.0 290 60.0
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 1.9e-91 340.1 288 60.8
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 3.2e-91 339.3 291 61.5
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 5.4e-91 338.6 287 59.9
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 7.1e-91 338.2 287 59.6
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 9.3e-91 337.8 290 59.3
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 1.2e-90 337.4 287 60.6
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.2e-90 337.4 290 58.3
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 2.1e-90 336.7 290 60.7
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 3.5e-90 335.9 285 61.1
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 4.6e-90 335.5 288 60.4
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 6.0e-90 335.1 292 58.9
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 6.0e-90 335.1 290 60.3
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 6.0e-90 335.1 290 60.3
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 6.0e-90 335.1 290 60.3
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 6.0e-90 335.1 291 60.1
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 1.7e-89 333.6 289 59.9
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 1.7e-89 333.6 288 60.1
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 3.0e-89 332.8 290 58.6
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 3.9e-89 332.4 291 58.1
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 3.9e-89 332.4 290 59.0
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 5.1e-89 332.0 288 58.0
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 6.6e-89 331.6 287 60.3
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 8.7e-89 331.3 296 57.8
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 8.7e-89 331.3 291 57.7
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 1.9e-88 330.1 291 57.0
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 3.3e-88 329.3 290 59.0
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 7.3e-88 328.2 289 59.5
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 7.3e-88 328.2 287 58.5
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 7.3e-88 328.2 289 58.8
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 7.3e-88 328.2 290 57.9
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 9.6e-88 327.8 294 58.5
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 1.3e-87 327.4 289 58.5
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 2.1e-87 326.6 307 54.1
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.1e-87 326.6 290 56.6
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 2.1e-87 326.6 290 56.6
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 2.1e-87 326.6 288 56.6
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 2.1e-87 326.6 288 57.6
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.8e-87 326.2 290 56.9
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 2.8e-87 326.2 286 55.9
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 6.2e-87 325.1 289 58.8
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 8.1e-87 324.7 289 57.4
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 1.4e-86 323.9 287 58.2
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.8e-86 323.6 286 55.6
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 3.1e-86 322.8 294 57.5
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 4.0e-86 322.4 288 55.6
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 5.3e-86 322.0 291 59.5
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 6.9e-86 321.6 280 59.3
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 6.9e-86 321.6 290 56.9
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.2e-85 320.9 299 55.5
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.0e-85 320.1 286 55.2
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 2.6e-85 319.7 288 58.7
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 2.6e-85 319.7 296 55.7
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 3.4e-85 319.3 291 56.0
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 4.4e-85 318.9 290 56.6
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 5.8e-85 318.5 286 56.6
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 5.8e-85 318.5 289 56.1
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 1.3e-84 317.4 289 56.4
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 3.8e-84 315.8 297 54.9
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 4.9e-84 315.5 287 57.1
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.1e-83 314.3 286 54.9
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 1.4e-83 313.9 289 55.0
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 4.2e-83 312.4 289 55.0
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 9.3e-83 311.2 291 55.3
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 1.6e-82 310.5 289 54.7
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 6.0e-82 308.5 284 55.3
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 7.8e-82 308.1 283 54.4
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 1.7e-81 307.0 285 54.7
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 3.0e-81 306.2 302 55.6
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 6.6e-81 305.1 283 55.5
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 6.6e-81 305.1 288 53.8
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.1e-80 304.3 283 54.8
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 9.6e-80 301.2 283 53.4
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 9.6e-80 301.2 294 54.4
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.1e-78 297.7 291 52.2
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 4.0e-78 295.8 286 52.8
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 5.3e-78 295.4 295 51.9
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 9.0e-78 294.7 290 52.1
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 1.5e-77 293.9 283 52.7
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 9.9e-77 291.2 337 49.6
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 8.4e-76 288.1 283 51.6
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 1.4e-75 287.3 283 50.5
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 1.4e-75 287.3 283 50.5
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 7.1e-75 285.0 288 51.0
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.2e-74 284.3 268 54.5
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 2.1e-74 283.5 284 51.1
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 2.1e-74 283.5 284 51.1
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.8e-73 280.4 283 49.1
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 5.1e-73 278.9 285 50.9
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 5.1e-73 278.9 285 50.9
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 3.3e-72 276.2 284 51.1
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 9.6e-72 274.6 287 52.3
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 8.1e-71 271.6 268 51.9
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 1.1e-70 271.2 250 57.2
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 2.2e-68 263.5 287 48.1
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.9e-68 263.1 283 48.8
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.9e-67 260.4 306 48.0
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 4.2e-67 259.2 285 49.1
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 4.2e-67 259.2 290 49.3
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.2e-66 257.7 285 48.8
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 3.5e-66 256.1 284 47.2
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 3.0e-65 253.1 255 49.8
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 8.7e-65 251.5 287 44.9
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 1.3e-63 247.7 190 62.6
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 2.6e-61 240.0 284 45.8
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 7.9e-58 228.4 172 63.4
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 9.0e-54 214.9 206 54.9
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 1.3e-52 211.1 179 57.0
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 5.0e-52 209.1 316 38.0
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.4e-49 201.1 314 38.9
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 2.4e-46 190.3 316 34.8
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 9.4e-43 178.3 301 35.9
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 5.2e-33 146.0 247 40.9
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.6e-29 134.4 289 32.9
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.1e-22 111.7 92 58.7
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 2.4e-14 84.0 65 60.0
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.6e-13 81.3 111 48.6
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 2.9e-12 77.0 54 59.3
HanXRQChr13g0403891 Helianthus annuus HOM05D004192 ORTHO05D221729 3.0e-09 67.0 38 94.7


User provided reference genes

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