Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 3.5e-186 654.8 335 100.0
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 2.4e-86 323.2 351 53.8
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 5.6e-75 285.4 342 51.2
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.3e-44 184.5 376 36.4
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 1.4e-38 164.5 394 33.8
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 1.9e-38 164.1 388 33.8
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 1.9e-35 154.1 390 33.6
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 3.3e-35 153.3 327 36.7
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 2.1e-34 150.6 254 40.6
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 4.0e-33 146.4 412 31.6
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.3e-31 141.4 387 31.5
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 8.4e-31 138.7 348 33.3
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.1e-30 138.3 406 30.0
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 1.4e-30 137.9 379 30.1
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 4.2e-30 136.3 405 29.9
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.2e-29 134.8 406 30.3
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 6.0e-29 132.5 401 31.2
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 1.8e-28 131.0 316 35.4
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 1.8e-28 131.0 205 42.0
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.1e-27 128.3 431 29.0
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 1.5e-27 127.9 395 29.6
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 2.5e-27 127.1 399 31.3
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 3.3e-27 126.7 410 28.3
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 3.3e-27 126.7 430 29.5
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 7.4e-27 125.6 402 30.1
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 7.4e-27 125.6 326 34.0
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 9.7e-27 125.2 246 40.2
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 1.6e-26 124.4 403 31.3
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 2.8e-26 123.6 390 30.3
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 6.3e-26 122.5 430 28.6
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 8.2e-26 122.1 391 30.2
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 2.4e-25 120.6 417 32.1
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 4.1e-25 119.8 312 32.4
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 2.0e-24 117.5 320 31.6
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 1.3e-23 114.8 400 30.2
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 1.7e-23 114.4 483 28.6
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 2.2e-23 114.0 141 48.9
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 2.2e-23 114.0 142 48.6
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 2.9e-23 113.6 483 26.9
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 2.9e-23 113.6 450 27.6
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 5.0e-23 112.8 398 29.6
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.9e-22 110.9 79 69.6
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 3.2e-22 110.2 128 46.9
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 7.2e-22 109.0 425 26.8
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 2.1e-21 107.5 154 45.5
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 2.7e-21 107.1 492 25.8
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 3.6e-21 106.7 417 30.0
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 3.6e-21 106.7 463 27.0
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 3.6e-21 106.7 110 52.7
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 3.6e-21 106.7 335 30.1
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 6.1e-21 105.9 239 34.3
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 6.1e-21 105.9 511 27.8
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 6.1e-21 105.9 468 28.0
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 6.1e-21 105.9 484 26.7
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 7.9e-21 105.5 471 27.6
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 7.9e-21 105.5 467 28.5
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 7.9e-21 105.5 436 28.0
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 7.9e-21 105.5 110 51.8
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 1.4e-20 104.8 476 26.7
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 1.4e-20 104.8 481 27.7
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 3.0e-20 103.6 462 26.4
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 3.0e-20 103.6 168 41.1
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 6.7e-20 102.4 428 26.9
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 6.7e-20 102.4 267 34.8
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 8.8e-20 102.1 434 26.7
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 1.1e-19 101.7 479 26.1
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 2.5e-19 100.5 149 41.6
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 4.3e-19 99.8 79 62.0
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 5.7e-19 99.4 87 58.6
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 5.7e-19 99.4 160 41.2
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 7.4e-19 99.0 81 61.7
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 1.3e-18 98.2 381 30.7
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.7e-18 97.8 302 29.5
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.7e-18 97.8 302 29.5
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 2.2e-18 97.4 304 29.6
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 2.8e-18 97.1 460 26.5
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 3.7e-18 96.7 139 44.6
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 4.8e-18 96.3 171 37.4
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 8.2e-18 95.5 398 25.9
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 1.1e-17 95.1 463 28.5
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.1e-17 95.1 446 26.9
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 1.1e-17 95.1 396 29.5
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 2.4e-17 94.0 337 30.3
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.1e-17 93.6 301 29.6
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 5.3e-17 92.8 83 54.2
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 6.9e-17 92.4 461 24.5
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 6.9e-17 92.4 255 31.8
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 2.0e-16 90.9 128 44.5
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.0e-16 90.9 293 28.7
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 3.4e-16 90.1 464 25.6
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 3.4e-16 90.1 249 33.3
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 4.5e-16 89.7 50 80.0
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 1.3e-15 88.2 80 55.0
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 1.3e-15 88.2 461 25.8
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.7e-15 87.8 399 26.1
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 3.8e-15 86.7 406 24.9
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 3.8e-15 86.7 226 34.1
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 5.0e-15 86.3 404 26.5
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 6.5e-15 85.9 271 31.0
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 8.5e-15 85.5 85 51.8
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 1.6e-13 81.3 463 24.8
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 2.1e-13 80.9 382 29.3
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 2.1e-13 80.9 52 71.2
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 4.7e-13 79.7 50 70.0
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 4.7e-13 79.7 70 55.7
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 2.3e-12 77.4 441 24.5
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 3.9e-12 76.6 427 24.8
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 3.9e-12 76.6 427 24.8
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 1.1e-11 75.1 447 24.4
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 1.1e-11 75.1 321 28.3
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.1e-11 75.1 474 24.5
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 1.5e-11 74.7 75 44.0
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 4.8e-10 69.7 252 29.4
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 3.1e-09 67.0 146 33.6
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 3.4e-08 63.5 45 62.2
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 4.5e-08 63.2 86 41.9
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 2.2e-07 60.8 197 24.9
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 3.8e-07 60.1 41 63.4
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 3.8e-07 60.1 45 60.0
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.1e-06 58.5 40 65.0
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 4.2e-06 56.6 50 48.0
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 5.5e-06 56.2 47 51.1
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 7.2e-06 55.8 46 50.0
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 7.2e-06 55.8 45 55.6
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 9.4e-06 55.5 41 61.0
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 9.4e-06 55.5 47 44.7


User provided reference genes

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