Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 4.6e-154 547.7 254 100.0
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 2.1e-122 442.6 248 78.6
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 2.6e-117 425.6 242 78.1
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 2.6e-117 425.6 233 81.1
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.0e-116 423.7 243 77.8
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.2e-116 422.5 241 76.3
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 3.8e-116 421.8 243 76.5
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.1e-115 420.2 233 80.3
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.9e-115 419.5 245 75.9
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.9e-115 419.5 242 76.4
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 2.5e-115 419.1 233 80.3
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 3.2e-115 418.7 233 77.7
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 3.2e-115 418.7 240 80.0
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 4.2e-115 418.3 232 78.9
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 5.5e-115 417.9 238 76.9
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 9.3e-115 417.2 242 76.0
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 9.3e-115 417.2 233 79.4
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.2e-114 416.8 234 78.2
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 6.0e-114 414.5 232 78.4
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 1.3e-113 413.3 234 77.4
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 1.8e-113 412.9 239 76.6
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 3.0e-113 412.1 248 74.6
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 8.7e-113 410.6 236 75.4
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 1.9e-112 409.5 232 77.6
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 1.9e-112 409.5 229 77.7
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 2.5e-112 409.1 244 73.0
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 4.3e-112 408.3 243 72.8
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 4.3e-112 408.3 235 77.0
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 4.3e-112 408.3 245 75.9
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 5.7e-112 407.9 242 75.2
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 7.4e-112 407.5 234 77.4
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 9.6e-112 407.1 232 78.4
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.3e-111 406.8 233 75.5
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 1.3e-111 406.8 239 74.5
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 2.8e-111 405.6 234 76.1
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.8e-111 404.8 246 72.4
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 1.1e-110 403.7 235 76.6
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.4e-110 403.3 246 72.4
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 1.4e-110 403.3 238 75.2
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 2.4e-110 402.5 232 76.3
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.1e-110 402.1 247 72.5
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 3.1e-110 402.1 247 72.9
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 4.1e-110 401.7 234 74.4
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 5.3e-110 401.4 234 76.1
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 6.9e-110 401.0 239 73.2
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 6.9e-110 401.0 233 76.0
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 1.2e-109 400.2 234 74.4
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 1.2e-109 400.2 240 73.3
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 1.5e-109 399.8 245 73.9
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 2.0e-109 399.4 239 73.6
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.0e-109 399.4 234 74.4
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.6e-109 399.1 234 74.4
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 2.6e-109 399.1 240 73.8
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 3.4e-109 398.7 244 72.5
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 5.9e-109 397.9 234 73.9
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 7.6e-109 397.5 241 71.4
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 7.6e-109 397.5 230 74.8
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 7.6e-109 397.5 234 73.9
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 7.6e-109 397.5 239 74.5
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 7.6e-109 397.5 246 70.7
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 1.0e-108 397.1 249 69.9
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.0e-108 397.1 234 74.4
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.0e-108 397.1 234 74.4
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 1.3e-108 396.7 232 74.1
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 1.3e-108 396.7 247 72.9
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.3e-108 396.7 234 74.8
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 1.3e-108 396.7 237 73.0
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.3e-108 396.7 240 72.1
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.3e-108 396.7 240 71.2
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 1.7e-108 396.4 239 72.0
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 1.7e-108 396.4 237 73.0
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.7e-108 396.4 238 73.1
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.7e-108 396.4 239 72.4
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 2.2e-108 396.0 247 72.9
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 2.2e-108 396.0 247 72.9
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.2e-108 396.0 235 74.0
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 2.2e-108 396.0 233 73.4
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.9e-108 395.6 233 75.1
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 5.0e-108 394.8 242 70.2
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 5.0e-108 394.8 249 70.3
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 5.0e-108 394.8 234 73.9
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 6.5e-108 394.4 234 73.9
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 6.5e-108 394.4 236 72.5
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 8.4e-108 394.0 247 71.7
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 8.4e-108 394.0 229 73.8
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 8.4e-108 394.0 250 69.2
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 8.4e-108 394.0 236 72.0
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 1.1e-107 393.7 241 71.0
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.1e-107 393.7 235 72.3
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 1.1e-107 393.7 245 72.7
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 1.1e-107 393.7 235 74.5
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 1.4e-107 393.3 237 73.0
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 1.9e-107 392.9 238 72.7
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 1.9e-107 392.9 227 76.2
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 3.2e-107 392.1 234 73.9
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 4.2e-107 391.7 238 72.3
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 7.2e-107 391.0 245 69.8
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 7.2e-107 391.0 237 72.2
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 9.3e-107 390.6 245 69.8
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 9.3e-107 390.6 247 71.7
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 1.2e-106 390.2 231 71.4
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.6e-106 389.8 233 72.1
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.6e-106 389.8 233 72.1
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 2.1e-106 389.4 247 69.6
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 2.1e-106 389.4 239 70.3
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 2.7e-106 389.0 238 71.4
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 2.7e-106 389.0 229 72.5
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.5e-106 388.7 238 70.6
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 3.5e-106 388.7 233 73.8
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 3.5e-106 388.7 231 72.7
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 4.6e-106 388.3 227 74.0
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 6.1e-106 387.9 229 73.4
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 6.1e-106 387.9 245 69.8
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 1.8e-105 386.3 231 72.7
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 2.3e-105 386.0 232 73.7
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 3.0e-105 385.6 231 72.7
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 3.0e-105 385.6 231 72.7
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 3.9e-105 385.2 236 69.9
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 3.9e-105 385.2 233 72.1
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.5e-104 383.3 227 71.8
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 1.5e-104 383.3 229 71.6
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 1.9e-104 382.9 248 69.4
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.5e-104 382.5 226 71.7
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 2.5e-104 382.5 229 71.2
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 5.7e-104 381.3 226 73.9
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 9.7e-104 380.6 238 71.4
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 3.7e-103 378.6 240 68.8
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 4.8e-103 378.3 241 70.1
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.1e-102 377.1 241 70.1
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.4e-102 376.7 241 70.1
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.4e-102 376.7 236 70.3
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 4.1e-102 375.2 232 69.0
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 1.2e-101 373.6 232 69.0
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.5e-101 373.2 227 69.6
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 2.0e-101 372.9 229 69.9
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 2.6e-101 372.5 232 69.0
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 3.4e-101 372.1 236 68.6
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 7.7e-101 370.9 229 71.2
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.1e-99 367.1 212 76.4
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 2.5e-99 365.9 229 69.0
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 6.1e-98 361.3 229 70.3
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 3.0e-97 359.0 236 67.4
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 4.5e-93 345.1 223 67.7
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 5.0e-92 341.7 233 66.1
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 6.5e-92 341.3 246 61.8
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 8.5e-92 340.9 236 64.4
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 8.5e-92 340.9 250 61.2
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 8.5e-92 340.9 236 65.7
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.2e-90 337.0 191 77.5
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 2.3e-89 332.8 253 61.7
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 3.7e-79 298.9 233 59.2
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 4.1e-78 295.4 156 82.1
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 1.0e-76 290.8 157 77.7
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.8e-73 280.0 163 74.8
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.0e-73 278.9 240 55.4
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 2.9e-60 236.1 159 67.3
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 1.0e-52 211.1 218 47.2
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.5e-48 197.2 229 44.5
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 4.3e-43 179.1 209 46.9
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 5.4e-38 162.2 89 79.8
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 1.9e-30 137.1 107 59.8
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 5.2e-25 119.0 116 50.9
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.6e-21 107.5 138 41.3
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 1.2e-13 81.3 51 56.9
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 6.7e-12 75.5 64 62.5


User provided reference genes

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