Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.0e-154 550.1 280 100.0
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.2e-125 452.6 292 83.2
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.3e-114 416.8 282 78.4
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 5.1e-114 414.8 287 74.9
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 5.8e-110 401.4 286 73.1
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.7e-109 399.8 287 73.5
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.8e-106 389.8 287 72.1
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 7.4e-105 384.4 287 70.0
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 9.6e-105 384.0 287 70.7
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 2.8e-104 382.5 274 72.6
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 3.7e-104 382.1 286 69.9
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 2.4e-103 379.4 288 69.1
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 3.1e-103 379.0 288 69.4
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 4.0e-103 378.6 283 68.9
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 6.9e-103 377.9 290 68.3
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 9.0e-103 377.5 295 67.5
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 2.0e-102 376.3 295 67.5
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 2.6e-102 375.9 283 66.8
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 2.6e-102 375.9 277 71.5
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 3.4e-102 375.6 287 69.0
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 4.5e-102 375.2 285 67.7
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 7.6e-102 374.4 287 68.3
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 7.6e-102 374.4 288 68.1
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 1.3e-101 373.6 289 66.4
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 2.2e-101 372.9 254 74.4
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 3.8e-101 372.1 290 67.6
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 6.5e-101 371.3 289 68.2
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 6.5e-101 371.3 293 67.2
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 8.4e-101 370.9 288 68.1
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 8.4e-101 370.9 288 67.7
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 8.4e-101 370.9 249 76.7
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 1.9e-100 369.8 286 71.0
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.5e-100 369.4 256 73.8
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.2e-100 369.0 289 67.8
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 4.2e-100 368.6 284 69.7
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 5.5e-100 368.2 286 70.6
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 1.2e-99 367.1 284 66.9
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 7.9e-99 364.4 286 68.5
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.0e-98 364.0 241 75.1
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 2.3e-98 362.8 245 74.3
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 3.0e-98 362.5 287 64.8
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 3.0e-98 362.5 288 66.0
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 5.1e-98 361.7 239 74.9
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 6.7e-98 361.3 290 66.9
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 6.7e-98 361.3 288 67.0
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 1.1e-97 360.5 242 75.6
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.9e-97 359.8 288 67.0
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 6.3e-96 354.8 296 63.9
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 1.8e-95 353.2 287 65.5
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 2.4e-95 352.8 286 65.0
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 3.1e-95 352.4 268 68.3
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 5.3e-95 351.7 283 64.0
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.2e-94 350.5 287 65.9
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 3.4e-94 349.0 286 64.0
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 7.7e-94 347.8 289 62.3
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 7.7e-94 347.8 269 67.7
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 1.3e-93 347.1 289 61.9
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-93 347.1 287 65.5
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 1.3e-93 347.1 245 69.8
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.7e-93 346.7 297 60.6
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 2.2e-93 346.3 286 65.0
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 2.9e-93 345.9 285 63.5
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 3.8e-93 345.5 286 62.6
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 6.5e-93 344.7 288 62.5
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 8.5e-93 344.4 286 64.0
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 1.4e-92 343.6 289 64.0
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 3.2e-92 342.4 286 61.5
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 7.2e-92 341.3 285 65.6
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 7.2e-92 341.3 287 64.5
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.2e-91 340.5 286 62.9
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 2.7e-91 339.3 285 62.5
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 4.6e-91 338.6 287 63.4
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 4.6e-91 338.6 287 63.4
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 1.8e-90 336.7 287 63.4
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 2.3e-90 336.3 287 63.1
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 1.1e-89 334.0 285 64.2
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 1.1e-89 334.0 248 68.1
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 3.3e-89 332.4 249 68.7
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 7.4e-89 331.3 299 58.2
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 2.2e-88 329.7 288 61.1
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 2.8e-88 329.3 287 63.4
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 3.7e-88 328.9 284 60.9
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.4e-87 327.0 287 61.3
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 1.4e-87 327.0 285 60.0
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.8e-87 326.6 269 63.9
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.1e-87 325.9 267 65.9
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 1.1e-84 317.4 242 68.6
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 4.2e-84 315.5 265 61.1
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.2e-83 313.9 266 63.9
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.4e-82 310.5 267 61.4
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 1.5e-81 307.0 309 57.6
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 1.1e-79 300.8 280 56.1
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 3.1e-79 299.3 292 57.5
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 5.9e-78 295.0 282 57.8
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.0e-77 294.3 249 65.1
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.7e-77 293.5 245 65.7
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 6.5e-77 291.6 238 65.1
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 2.7e-75 286.2 288 55.2
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 5.2e-74 282.0 183 75.4
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 5.3e-71 271.9 222 60.4
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 2.0e-70 270.0 328 48.5
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 7.7e-70 268.1 222 60.8
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 2.2e-69 266.5 237 61.6
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.9e-68 263.5 268 51.9
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 7.5e-65 251.5 232 53.4
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 9.8e-65 251.1 175 71.4
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.2e-64 250.0 233 54.9
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 6.3e-64 248.4 164 73.2
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 1.0e-61 241.1 242 48.8
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 3.6e-59 232.6 241 50.2
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 4.1e-55 219.2 242 49.2
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 7.0e-55 218.4 177 61.0
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 9.1e-55 218.0 265 49.8
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 1.0e-50 204.5 168 65.5
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 4.1e-47 192.6 237 50.2
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 7.0e-47 191.8 226 50.0
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 9.5e-44 181.4 112 79.5
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 7.8e-38 161.8 222 41.9
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.1e-31 141.4 130 58.5
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.9e-31 140.6 112 62.5
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 1.6e-27 127.5 198 37.4
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 3.1e-26 123.2 138 48.6
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 4.1e-23 112.8 73 69.9
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 4.1e-23 112.8 79 64.6
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 5.4e-23 112.5 73 75.3
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 3.5e-22 109.8 73 68.5
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 3.3e-20 103.2 80 63.8
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.2e-17 94.7 166 34.3
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 9.9e-17 91.7 80 62.5
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 3.2e-15 86.7 195 30.8
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 7.8e-14 82.0 104 51.9
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.0e-13 81.6 104 51.0
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.0e-13 81.6 104 51.0
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.3e-13 80.5 104 50.0
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.9e-13 79.7 104 50.0
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 5.1e-13 79.3 54 75.9
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 5.1e-13 79.3 65 61.5
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 5.6e-12 75.9 101 43.6
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 8.1e-11 72.0 58 62.1
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 1.8e-10 70.9 129 41.1
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 2.6e-09 67.0 209 29.7
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 5.8e-09 65.9 52 65.4
HanXRQChr17g0542141 Helianthus annuus HOM05D005617 ORTHO05D221402 2.9e-08 63.5 36 91.7


User provided reference genes

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