Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0455081 Helianthus annuus HOM05D000735 ORTHO05D004669 2.4e-125 452.2 235 100.0
HanXRQChr14g0455051 Helianthus annuus HOM05D000735 ORTHO05D004669 5.1e-83 311.6 204 81.4
QL05p065753 Quercus lobata HOM05D000735 ORTHO05D004669 3.9e-67 258.8 231 64.9
TAR365G0853 Trochodendron aralioides HOM05D000735 ORTHO05D004669 1.1e-66 257.3 233 63.9
CSS0035227 Camellia sinensis var. sinensis HOM05D000735 ORTHO05D004669 3.3e-66 255.8 233 65.2
Hma1.2p1_0394F.1_g143380 Hydrangea macrophylla HOM05D000735 ORTHO05D004669 1.3e-65 253.8 234 64.1
BcaC08g47521 Brassica carinata HOM05D000735 ORTHO05D004669 6.3e-65 251.5 233 63.5
Oeu025986.1 Olea europaea HOM05D000735 ORTHO05D004669 8.2e-65 251.1 233 61.4
GSVIVG01019363001 Vitis vinifera HOM05D000735 ORTHO05D004669 1.8e-64 250.0 234 62.0
BraA07t31972Z Brassica rapa HOM05D000735 ORTHO05D004669 2.2e-62 243.0 238 63.4
Rhsim13G0137400 Rhododendron simsii HOM05D000735 ORTHO05D004669 3.8e-62 242.3 230 61.3
BraA07t30348Z Brassica rapa HOM05D000290 ORTHO05D006513 6.5e-62 241.5 237 61.2
CiPaw.10G085400 Carya illinoinensis HOM05D000735 ORTHO05D004669 6.5e-62 241.5 231 61.0
C06p29770 Brassica napus HOM05D000290 ORTHO05D006513 1.1e-61 240.7 235 60.0
BolC6t38138H Brassica oleracea HOM05D000290 ORTHO05D006513 1.1e-61 240.7 235 60.0
A07p27040 Brassica napus HOM05D000290 ORTHO05D006513 1.4e-61 240.4 236 61.0
Cc09_g00030 Coffea canephora HOM05D000735 ORTHO05D004669 1.4e-61 240.4 233 61.8
Hund24367 Selenicereus undatus HOM05D000735 ORTHO05D004669 7.2e-61 238.0 229 61.6
Nn1g08298 Nelumbo nucifera HOM05D000735 ORTHO05D004669 1.6e-60 236.9 233 59.7
A07p44630 Brassica napus HOM05D000735 ORTHO05D004669 2.7e-60 236.1 233 60.5
BolC6t40362H Brassica oleracea HOM05D000735 ORTHO05D004669 2.7e-60 236.1 233 59.7
ECA247G3031 Erigeron canadensis HOM05D000735 ORTHO05D004669 2.7e-60 236.1 236 60.2
Prupe.4G000200 Prunus persica HOM05D000735 ORTHO05D004669 2.7e-60 236.1 230 58.3
MD00G1208600 Malus domestica HOM05D000735 ORTHO05D004669 3.6e-60 235.7 230 58.7
Cpa.g.sc31.41 Carica papaya HOM05D000735 ORTHO05D004669 6.1e-60 235.0 233 60.9
Atru.chr1.2250_Atru.chr1.2251 Acer truncatum HOM05D000735 ORTHO05D004669 1.0e-59 234.2 233 58.4
Sabra16G0008100 Salix brachista HOM05D000735 ORTHO05D004669 2.3e-59 233.0 213 63.8
DCAR_022843 Daucus carota HOM05D000735 ORTHO05D004669 3.0e-59 232.6 230 59.1
COL.COLO4_31970 Corchorus olitorius HOM05D000735 ORTHO05D004669 3.9e-59 232.3 228 61.0
Manes.10G068400 Manihot esculenta HOM05D000735 ORTHO05D004669 3.9e-59 232.3 233 59.2
Nitab4.5_0000276g0160 Nicotiana tabacum HOM05D000735 ORTHO05D004669 1.1e-58 230.7 232 59.9
THA.LOC104813594 Tarenaya hassleriana HOM05D000735 ORTHO05D004669 1.1e-58 230.7 233 58.8
unitig_26.g10052 Utricularia gibba HOM05D000735 ORTHO05D004669 1.5e-58 230.3 234 59.4
Ca_11371_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 2.0e-58 229.9 231 58.9
MELO3C026096.2 Cucumis melo HOM05D000735 ORTHO05D004669 4.3e-58 228.8 235 58.7
CsaV3_1G015620 Cucumis sativus L. HOM05D000735 ORTHO05D004669 4.3e-58 228.8 235 58.7
Potri.016G000200 Populus trichocarpa HOM05D000735 ORTHO05D004669 4.3e-58 228.8 234 58.1
TWI63G0350 Tripterygium wilfordii HOM05D000735 ORTHO05D004669 4.3e-58 228.8 233 57.1
FvH4_3g00030 Fragaria vesca HOM05D000735 ORTHO05D004669 5.7e-58 228.4 228 58.3
SHI24427 Sapria himalayana HOM05D000735 ORTHO05D004669 7.4e-58 228.0 232 58.6
AT1G79610 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 2.2e-57 226.5 233 58.8
Migut.M01487 Erythranthe guttata HOM05D000735 ORTHO05D004669 2.2e-57 226.5 233 58.8
MSTRG.7102 Avicennia marina HOM05D000735 ORTHO05D004669 2.8e-57 226.1 233 57.5
Thhalv10018385m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 2.8e-57 226.1 235 57.9
Thecc.06G244900 Theobroma cacao HOM05D000735 ORTHO05D004669 2.8e-57 226.1 219 60.3
CARHR073340 Cardamine hirsuta HOM05D000735 ORTHO05D004669 3.7e-57 225.7 233 58.4
AL2G40300 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 4.8e-57 225.3 233 58.4
Carub.0002s2649 Capsella rubella HOM05D000735 ORTHO05D004669 4.8e-57 225.3 233 58.4
Sed0022776 Sechium edule HOM05D000735 ORTHO05D004669 4.8e-57 225.3 228 57.5
Actinidia01459 Actinidia chinensis HOM05D000735 ORTHO05D004669 6.3e-57 224.9 233 57.5
Eucgr.E04241 Eucalyptus grandis HOM05D000735 ORTHO05D004669 1.1e-56 224.2 223 58.3
Gohir.A01G036500 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.1e-56 224.2 228 58.8
Gorai.002G032300 Gossypium raimondii HOM05D000735 ORTHO05D004669 1.1e-56 224.2 228 58.8
HanXRQChr16g0515311 Helianthus annuus HOM05D000735 ORTHO05D004669 1.1e-56 224.2 233 62.2
Solyc04g056600.4 Solanum lycopersicum HOM05D000735 ORTHO05D004669 1.4e-56 223.8 232 57.8
VMungo0540G1324 Vigna mungo HOM05D000735 ORTHO05D004669 2.4e-56 223.0 231 57.1
Zm00001eb308990 Zea mays HOM05D000735 ORTHO05D004669 3.1e-56 222.6 223 58.3
Gohir.D01G023800 Gossypium hirsutum HOM05D000735 ORTHO05D004669 5.3e-56 221.9 216 60.2
PGR042G3067 Punica granatum HOM05D000735 ORTHO05D004669 5.3e-56 221.9 240 56.2
Duzib192G0339 Durio zibethinus HOM05D000735 ORTHO05D004669 1.2e-55 220.7 228 57.5
Gohir.A06G181100 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.2e-55 220.7 219 58.4
Gohir.D06G187900 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.2e-55 220.7 219 58.4
Gorai.010G220200 Gossypium raimondii HOM05D000735 ORTHO05D004669 1.2e-55 220.7 219 58.4
Phvul.006G134033 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 1.5e-55 220.3 231 56.7
Thhalv10011392m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 2.6e-55 219.5 235 58.7
Os09g0286400 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 2.6e-55 219.5 241 54.8
AL1G64590 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 1.0e-54 217.6 233 57.1
Ca_00788_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 1.3e-54 217.2 231 55.4
Glyma.15G124100 Glycine max HOM05D000735 ORTHO05D004669 1.7e-54 216.9 231 55.8
Glyma.09G018200 Glycine max HOM05D000735 ORTHO05D004669 2.2e-54 216.5 231 55.8
Sp1g41910 Schrenkiella parvula HOM05D000735 ORTHO05D004669 2.2e-54 216.5 235 57.0
Medtr2g028230 Medicago truncatula HOM05D000735 ORTHO05D004669 2.9e-54 216.1 231 55.0
AT1G54370 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 5.0e-54 215.3 233 56.2
Carub.0001s4478 Capsella rubella HOM05D000735 ORTHO05D004669 5.0e-54 215.3 235 57.4
Phvul.003G089800 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 6.5e-54 214.9 230 56.1
Aqoxy1G01335 Aquilegia oxysepala HOM05D000735 ORTHO05D004669 8.5e-54 214.5 216 57.9
Lj6g0025657 Lotus japonicus HOM05D000735 ORTHO05D004669 1.1e-53 214.2 231 55.4
C06p53470 Brassica napus HOM05D000735 ORTHO05D004669 3.2e-53 212.6 233 54.9
PSO541G3261 Papaver somniferum HOM05D000735 ORTHO05D004669 1.4e-51 207.2 211 57.3
PSO675G6844 Papaver somniferum HOM05D000735 ORTHO05D004669 1.4e-51 207.2 211 57.3
Lsat_1_v5_gn_4_64520 Lactuca sativa HOM05D000735 ORTHO05D004669 1.8e-51 206.8 233 56.2
Glyma.07G270400 Glycine max HOM05D000735 ORTHO05D004669 3.9e-51 205.7 216 55.6
Aa31LG4G1360 Aethionema arabicum HOM05D000735 ORTHO05D004669 9.7e-50 201.1 235 54.5
Zm00001eb316390 Zea mays HOM05D000735 ORTHO05D004669 2.8e-49 199.5 229 51.1
Os09g0482620 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 1.1e-48 197.6 243 49.4
Haze_07068 Corylus avellana HOM05D000735 ORTHO05D004669 2.4e-48 196.4 232 54.7
Lj2A254G92 Lonicera japonica HOM05D000735 ORTHO05D004669 3.5e-47 192.6 232 54.3
ClCG01G011310 Citrullus lanatus HOM05D000735 ORTHO05D004669 1.1e-45 187.6 235 52.3
AUR62015223 Chenopodium quinoa HOM05D000735 ORTHO05D004669 4.2e-45 185.7 233 51.1
Sp5g34680 Schrenkiella parvula HOM05D000735 ORTHO05D004669 3.6e-44 182.6 235 50.2
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 4.7e-44 182.2 232 50.4
arahy.Tifrunner.gnm1.ann1.MYF06S Arachis hypogaea HOM05D000735 ORTHO05D004669 4.7e-44 182.2 233 50.2
Mapoly0001s0256 Marchantia polymorpha HOM05D000735 ORTHO05D004669 1.8e-43 180.3 227 49.3
Ciclev10018215m.g Citrus clementina HOM05D000735 ORTHO05D004669 2.3e-43 179.9 232 50.0
ATR0568G172 Amborella trichopoda HOM05D000735 ORTHO05D004669 2.0e-42 176.8 228 50.0
FAN25G1440 Fragaria x ananassa HOM05D000735 ORTHO05D004669 3.3e-42 176.0 231 51.5
SMO367G0875 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 7.5e-42 174.9 216 47.7
SGA_v2.0_scaffold186G40162 Striga asiatica HOM05D000735 ORTHO05D004669 7.5e-42 174.9 262 46.6
Pp3c13_14340 Physcomitrium patens HOM05D000735 ORTHO05D004669 9.7e-42 174.5 227 48.9
FAN21G4060 Fragaria x ananassa HOM05D000735 ORTHO05D004669 1.3e-41 174.1 230 50.9
RcHm_v2.0_Chr5g0000051 Rosa chinensis HOM05D000735 ORTHO05D004669 1.4e-40 170.6 232 50.0
Dinv04373 Davidia involucrata HOM05D000735 ORTHO05D004669 1.6e-36 157.1 99 80.8
HPP92_027541 Vanilla planifolia HOM05D000735 ORTHO05D004669 1.8e-35 153.7 237 46.0
CAN.G642.1 Capsicum annuum HOM05D000735 ORTHO05D004669 3.4e-34 149.4 232 47.4
TPR.G10511 Trifolium pratense HOM05D000735 ORTHO05D004669 3.4e-34 149.4 99 74.7
arahy.Tifrunner.gnm1.ann1.LC1B8P Arachis hypogaea HOM05D000735 ORTHO05D004669 4.4e-34 149.1 216 44.9
AUR62017691 Chenopodium quinoa HOM05D000735 ORTHO05D004669 7.5e-34 148.3 236 42.8
Lalb_Chr20g0119801 Lupinus albus HOM05D000735 ORTHO05D004669 3.1e-32 142.9 104 73.1
EL10Ac9g22942 Beta vulgaris HOM05D000735 ORTHO05D004669 9.1e-32 141.4 228 42.5
Lalb_Chr18g0057611 Lupinus albus HOM05D000735 ORTHO05D004669 9.1e-32 141.4 110 70.0
VMungo1215G1296 Vigna mungo HOM05D000735 ORTHO05D004669 2.2e-30 136.7 217 43.3
Nitab4.5_0000083g0040 Nicotiana tabacum HOM05D000735 ORTHO05D004669 4.0e-27 125.9 232 40.1
SalBow8G2387 Salvia bowleyana HOM05D000735 ORTHO05D004669 5.2e-27 125.6 92 73.9
SEGI_21103 Sequoiadendron giganteum HOM05D000735 ORTHO05D004669 2.6e-26 123.2 176 46.0
vmacro03581 Vaccinium macrocarpon HOM05D000735 ORTHO05D004669 8.3e-25 118.2 224 40.6
Peaxi162Scf00529g00815 Petunia axillaris HOM05D000735 ORTHO05D004669 1.1e-24 117.9 230 38.3
Lalb_Chr18g0057601 Lupinus albus HOM05D000735 ORTHO05D004669 3.5e-23 112.8 68 83.8
Sc25g0001880 Simmondsia chinensis HOM05D000735 ORTHO05D004669 4.5e-23 112.5 66 87.9
HPP92_003015 Vanilla planifolia HOM05D000735 ORTHO05D004669 5.9e-23 112.1 66 87.9
SalBow8G3892 Salvia bowleyana HOM05D000735 ORTHO05D004669 7.7e-23 111.7 68 85.3
Lalb_Chr20g0119791 Lupinus albus HOM05D000735 ORTHO05D004669 1.7e-22 110.5 66 84.8
Mapoly0058s0105 Marchantia polymorpha HOM05D000735 ORTHO05D004669 1.7e-22 110.5 228 32.5
Ciclev10013365m.g Citrus clementina HOM05D000735 ORTHO05D004669 3.8e-22 109.4 197 39.6
Psat1g172120 Pisum sativum HOM05D000735 ORTHO05D004669 5.0e-22 109.0 66 84.8
Ciclev10024040m.g Citrus clementina HOM05D000735 ORTHO05D004669 6.6e-22 108.6 75 72.0
Ciclev10026680m.g Citrus clementina HOM05D000735 ORTHO05D004669 5.6e-21 105.5 79 65.8
Ciclev10033106m.g Citrus clementina HOM05D000735 ORTHO05D004669 1.2e-20 104.4 78 66.7
CBR_g54785 Chara braunii HOM05D000735 ORTHO05D004669 2.3e-19 100.1 232 29.7
SMO364G0202 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 5.7e-18 95.5 219 33.3
arahy.Tifrunner.gnm1.ann1.3U55TZ Arachis hypogaea HOM05D000735 ORTHO05D004669 6.4e-17 92.0 216 33.8
BcaB02g07228 Brassica carinata HOM05D000735 ORTHO05D004669 5.4e-16 89.0 67 73.1
MCO07G302 Micromonas commoda HOM05D000735 ORTHO05D004669 2.7e-15 86.7 206 31.1
PRCOL_00002497 Prasinoderma coloniale HOM05D000735 ORTHO05D004669 2.7e-15 86.7 226 28.3
Sc25g0001890 Simmondsia chinensis HOM05D000735 ORTHO05D004669 1.0e-14 84.7 64 68.8
Ah.01g012200 Amaranthus hybridus HOM05D000735 ORTHO05D004669 4.3e-13 79.3 65 69.2
MCO01G278 Micromonas commoda HOM05D000735 ORTHO05D004669 4.0e-11 72.8 225 27.6
Cre16.g671250 Chlamydomonas reinhardtii HOM05D000735 ORTHO05D004669 6.8e-11 72.0 232 28.0
PRCOL_00005087 Prasinoderma coloniale HOM05D000735 ORTHO05D004669 2.6e-10 70.1 221 27.6
Cre13.g589800 Chlamydomonas reinhardtii HOM05D000735 ORTHO05D004669 3.4e-10 69.7 231 25.1
CBR_g31696 Chara braunii HOM05D000735 ORTHO05D000838 1.3e-09 67.8 205 28.8
Pp3c9_15590 Physcomitrium patens HOM05D000735 ORTHO05D004669 1.3e-09 67.8 65 50.8
Pp3c7_5310 Physcomitrium patens HOM05D000735 ORTHO05D004669 1.7e-09 67.4 65 60.0
Cre02.g144550 Chlamydomonas reinhardtii HOM05D000735 ORTHO05D004669 1.3e-06 57.8 88 42.0
Pp3c3_15950 Physcomitrium patens HOM05D000735 ORTHO05D004669 2.3e-06 57.0 206 29.6
SMO134G0160 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 2.3e-06 57.0 118 37.3
Cfa024656 Carpinus fangiana HOM05D000735 ORTHO05D004669 3.0e-06 56.6 88 43.2
CDE06G1452 Ceratophyllum demersum HOM05D000735 ORTHO05D004669 6.6e-06 55.5 32 84.4


User provided reference genes

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