Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0455051 Helianthus annuus HOM05D000735 ORTHO05D004669 5.2e-108 394.4 204 100.0
HanXRQChr14g0455081 Helianthus annuus HOM05D000735 ORTHO05D004669 1.5e-83 313.2 204 81.4
CSS0035227 Camellia sinensis var. sinensis HOM05D000735 ORTHO05D004669 8.2e-45 184.5 106 88.7
Cc09_g00030 Coffea canephora HOM05D000735 ORTHO05D004669 2.9e-42 176.0 101 89.1
QL05p065753 Quercus lobata HOM05D000735 ORTHO05D004669 2.9e-42 176.0 196 56.6
TAR365G0853 Trochodendron aralioides HOM05D000735 ORTHO05D004669 8.5e-42 174.5 172 60.5
GSVIVG01019363001 Vitis vinifera HOM05D000735 ORTHO05D004669 1.9e-41 173.3 180 57.8
Oeu025986.1 Olea europaea HOM05D000735 ORTHO05D004669 3.2e-41 172.6 164 59.8
Hma1.2p1_0394F.1_g143380 Hydrangea macrophylla HOM05D000735 ORTHO05D004669 1.2e-40 170.6 206 55.3
Rhsim13G0137400 Rhododendron simsii HOM05D000735 ORTHO05D004669 1.2e-40 170.6 162 62.3
Dinv04373 Davidia involucrata HOM05D000735 ORTHO05D004669 6.1e-40 168.3 99 86.9
Prupe.4G000200 Prunus persica HOM05D000735 ORTHO05D004669 2.3e-39 166.4 163 57.7
A07p27040 Brassica napus HOM05D000290 ORTHO05D006513 3.0e-39 166.0 103 84.5
BraA07t30348Z Brassica rapa HOM05D000290 ORTHO05D006513 3.0e-39 166.0 103 84.5
DCAR_022843 Daucus carota HOM05D000735 ORTHO05D004669 8.7e-39 164.5 95 87.4
BraA07t31972Z Brassica rapa HOM05D000735 ORTHO05D004669 1.1e-38 164.1 101 85.1
CiPaw.10G085400 Carya illinoinensis HOM05D000735 ORTHO05D004669 1.9e-38 163.3 161 60.2
ECA247G3031 Erigeron canadensis HOM05D000735 ORTHO05D004669 1.9e-38 163.3 101 85.1
BcaC08g47521 Brassica carinata HOM05D000735 ORTHO05D004669 3.3e-38 162.5 208 55.3
C06p29770 Brassica napus HOM05D000290 ORTHO05D006513 4.3e-38 162.2 181 55.8
BolC6t38138H Brassica oleracea HOM05D000290 ORTHO05D006513 4.3e-38 162.2 181 55.8
COL.COLO4_31970 Corchorus olitorius HOM05D000735 ORTHO05D004669 4.3e-38 162.2 96 84.4
Migut.M01487 Erythranthe guttata HOM05D000735 ORTHO05D004669 5.7e-38 161.8 163 60.1
MD00G1208600 Malus domestica HOM05D000735 ORTHO05D004669 5.7e-38 161.8 160 58.1
A07p44630 Brassica napus HOM05D000735 ORTHO05D004669 7.4e-38 161.4 173 59.0
Cpa.g.sc31.41 Carica papaya HOM05D000735 ORTHO05D004669 7.4e-38 161.4 130 69.2
Manes.10G068400 Manihot esculenta HOM05D000735 ORTHO05D004669 9.7e-38 161.0 163 60.1
Nn1g08298 Nelumbo nucifera HOM05D000735 ORTHO05D004669 9.7e-38 161.0 134 66.4
THA.LOC104813594 Tarenaya hassleriana HOM05D000735 ORTHO05D004669 1.3e-37 160.6 98 82.7
TPR.G10511 Trifolium pratense HOM05D000735 ORTHO05D004669 1.3e-37 160.6 99 80.8
Hund24367 Selenicereus undatus HOM05D000735 ORTHO05D004669 2.8e-37 159.5 191 52.9
unitig_26.g10052 Utricularia gibba HOM05D000735 ORTHO05D004669 2.8e-37 159.5 163 58.9
Atru.chr1.2250_Atru.chr1.2251 Acer truncatum HOM05D000735 ORTHO05D004669 4.8e-37 158.7 163 57.1
SHI24427 Sapria himalayana HOM05D000735 ORTHO05D004669 4.8e-37 158.7 101 76.2
Actinidia01459 Actinidia chinensis HOM05D000735 ORTHO05D004669 8.2e-37 157.9 153 62.7
Gohir.A01G036500 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.1e-36 157.5 93 86.0
Gorai.002G032300 Gossypium raimondii HOM05D000735 ORTHO05D004669 1.1e-36 157.5 93 86.0
Potri.016G000200 Populus trichocarpa HOM05D000735 ORTHO05D004669 1.1e-36 157.5 164 59.1
MELO3C026096.2 Cucumis melo HOM05D000735 ORTHO05D004669 1.8e-36 156.8 165 59.4
CsaV3_1G015620 Cucumis sativus L. HOM05D000735 ORTHO05D004669 1.8e-36 156.8 165 59.4
CARHR073340 Cardamine hirsuta HOM05D000735 ORTHO05D004669 2.4e-36 156.4 98 82.7
MSTRG.7102 Avicennia marina HOM05D000735 ORTHO05D004669 3.1e-36 156.0 163 57.1
BolC6t40362H Brassica oleracea HOM05D000735 ORTHO05D004669 3.1e-36 156.0 119 73.9
Ca_11371_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 4.1e-36 155.6 174 56.3
TWI63G0350 Tripterygium wilfordii HOM05D000735 ORTHO05D004669 6.9e-36 154.8 165 58.2
Gohir.D01G023800 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.2e-35 154.1 93 83.9
Sed0022776 Sechium edule HOM05D000735 ORTHO05D004669 1.5e-35 153.7 158 58.9
PGR042G3067 Punica granatum HOM05D000735 ORTHO05D004669 2.0e-35 153.3 105 78.1
Thhalv10018385m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 3.4e-35 152.5 164 56.7
AL2G40300 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 5.9e-35 151.8 162 57.4
AL1G64590 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 1.3e-34 150.6 98 78.6
AT1G79610 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 1.3e-34 150.6 162 56.8
FvH4_3g00030 Fragaria vesca HOM05D000735 ORTHO05D004669 1.3e-34 150.6 155 57.4
Gohir.A06G181100 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.3e-34 150.6 84 86.9
Gohir.D06G187900 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.3e-34 150.6 84 86.9
Gorai.010G220200 Gossypium raimondii HOM05D000735 ORTHO05D004669 1.3e-34 150.6 84 86.9
Medtr2g028230 Medicago truncatula HOM05D000735 ORTHO05D004669 1.3e-34 150.6 164 55.5
Nitab4.5_0000276g0160 Nicotiana tabacum HOM05D000735 ORTHO05D004669 1.3e-34 150.6 172 55.8
Solyc04g056600.4 Solanum lycopersicum HOM05D000735 ORTHO05D004669 1.7e-34 150.2 162 57.4
VMungo0540G1324 Vigna mungo HOM05D000735 ORTHO05D004669 1.7e-34 150.2 140 62.1
Lalb_Chr20g0119801 Lupinus albus HOM05D000735 ORTHO05D004669 2.2e-34 149.8 104 77.9
Carub.0002s2649 Capsella rubella HOM05D000735 ORTHO05D004669 2.9e-34 149.4 162 56.2
Thhalv10011392m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 2.9e-34 149.4 100 80.0
Sp1g41910 Schrenkiella parvula HOM05D000735 ORTHO05D004669 3.8e-34 149.1 100 79.0
AT1G54370 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 6.5e-34 148.3 98 76.5
Lalb_Chr18g0057611 Lupinus albus HOM05D000735 ORTHO05D004669 8.5e-34 147.9 110 73.6
Sabra16G0008100 Salix brachista HOM05D000735 ORTHO05D004669 8.5e-34 147.9 201 49.8
Thecc.06G244900 Theobroma cacao HOM05D000735 ORTHO05D004669 8.5e-34 147.9 149 59.1
Carub.0001s4478 Capsella rubella HOM05D000735 ORTHO05D004669 1.1e-33 147.5 100 78.0
Duzib192G0339 Durio zibethinus HOM05D000735 ORTHO05D004669 1.4e-33 147.1 158 57.0
Os09g0286400 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 4.2e-33 145.6 171 52.6
Ca_00788_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 5.5e-33 145.2 161 55.9
Lj6g0025657 Lotus japonicus HOM05D000735 ORTHO05D004669 5.5e-33 145.2 164 55.5
Zm00001eb308990 Zea mays HOM05D000735 ORTHO05D004669 5.5e-33 145.2 138 60.1
HanXRQChr16g0515311 Helianthus annuus HOM05D000735 ORTHO05D004669 9.4e-33 144.4 173 56.6
Glyma.15G124100 Glycine max HOM05D000735 ORTHO05D004669 1.6e-32 143.7 164 54.3
Phvul.006G134033 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 1.6e-32 143.7 160 53.8
Glyma.09G018200 Glycine max HOM05D000735 ORTHO05D004669 2.1e-32 143.3 164 54.3
Lsat_1_v5_gn_4_64520 Lactuca sativa HOM05D000735 ORTHO05D004669 6.1e-32 141.7 78 91.0
Eucgr.E04241 Eucalyptus grandis HOM05D000735 ORTHO05D004669 1.4e-31 140.6 205 45.9
Aqoxy1G01335 Aquilegia oxysepala HOM05D000735 ORTHO05D004669 2.3e-31 139.8 146 57.5
C06p53470 Brassica napus HOM05D000735 ORTHO05D004669 3.9e-31 139.0 161 54.0
Phvul.003G089800 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 1.5e-30 137.1 160 55.0
SalBow8G2387 Salvia bowleyana HOM05D000735 ORTHO05D004669 1.5e-30 137.1 88 80.7
SGA_v2.0_scaffold186G40162 Striga asiatica HOM05D000735 ORTHO05D004669 2.2e-29 133.3 78 87.2
PSO541G3261 Papaver somniferum HOM05D000735 ORTHO05D004669 1.4e-28 130.6 140 54.3
PSO675G6844 Papaver somniferum HOM05D000735 ORTHO05D004669 1.4e-28 130.6 140 54.3
Lj2A254G92 Lonicera japonica HOM05D000735 ORTHO05D004669 2.4e-28 129.8 77 87.0
Os09g0482620 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 2.4e-28 129.8 111 61.3
Glyma.07G270400 Glycine max HOM05D000735 ORTHO05D004669 1.2e-27 127.5 146 54.1
Nitab4.5_0000083g0040 Nicotiana tabacum HOM05D000735 ORTHO05D004669 1.2e-27 127.5 77 87.0
Haze_07068 Corylus avellana HOM05D000735 ORTHO05D004669 7.7e-27 124.8 160 53.1
AUR62015223 Chenopodium quinoa HOM05D000735 ORTHO05D004669 6.5e-26 121.7 164 52.4
Ciclev10018215m.g Citrus clementina HOM05D000735 ORTHO05D004669 8.5e-26 121.3 77 79.2
Zm00001eb316390 Zea mays HOM05D000735 ORTHO05D004669 1.1e-25 120.9 159 48.4
Ciclev10024040m.g Citrus clementina HOM05D000735 ORTHO05D004669 2.5e-25 119.8 75 80.0
Mapoly0001s0256 Marchantia polymorpha HOM05D000735 ORTHO05D004669 4.2e-25 119.0 89 66.3
SMO367G0875 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 5.5e-25 118.6 81 70.4
Ciclev10013365m.g Citrus clementina HOM05D000735 ORTHO05D004669 7.2e-25 118.2 85 69.4
Peaxi162Scf00529g00815 Petunia axillaris HOM05D000735 ORTHO05D004669 9.4e-25 117.9 75 81.3
Ciclev10026680m.g Citrus clementina HOM05D000735 ORTHO05D004669 1.6e-24 117.1 79 73.4
ClCG01G011310 Citrullus lanatus HOM05D000735 ORTHO05D004669 2.7e-24 116.3 163 50.9
Sp5g34680 Schrenkiella parvula HOM05D000735 ORTHO05D004669 2.3e-23 113.2 154 51.3
Ciclev10033106m.g Citrus clementina HOM05D000735 ORTHO05D004669 3.9e-23 112.5 78 71.8
Aa31LG4G1360 Aethionema arabicum HOM05D000735 ORTHO05D004669 6.7e-23 111.7 205 47.8
ATR0568G172 Amborella trichopoda HOM05D000735 ORTHO05D004669 8.8e-23 111.3 119 56.3
Pp3c13_14340 Physcomitrium patens HOM05D000735 ORTHO05D004669 3.3e-22 109.4 138 50.0
arahy.Tifrunner.gnm1.ann1.MYF06S Arachis hypogaea HOM05D000735 ORTHO05D004669 1.4e-20 104.0 204 41.7
RcHm_v2.0_Chr5g0000051 Rosa chinensis HOM05D000735 ORTHO05D004669 1.8e-20 103.6 59 84.7
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 4.1e-20 102.4 161 46.6
BcaB02g07228 Brassica carinata HOM05D000735 ORTHO05D004669 7.7e-19 98.2 67 80.6
EL10Ac9g22942 Beta vulgaris HOM05D000735 ORTHO05D004669 1.0e-18 97.8 68 76.5
Sc25g0001890 Simmondsia chinensis HOM05D000735 ORTHO05D004669 6.5e-18 95.1 64 76.6
arahy.Tifrunner.gnm1.ann1.3U55TZ Arachis hypogaea HOM05D000735 ORTHO05D004669 1.1e-17 94.4 86 59.3
FAN25G1440 Fragaria x ananassa HOM05D000735 ORTHO05D004669 1.9e-17 93.6 174 39.7
arahy.Tifrunner.gnm1.ann1.LC1B8P Arachis hypogaea HOM05D000735 ORTHO05D004669 2.5e-17 93.2 84 59.5
FAN21G4060 Fragaria x ananassa HOM05D000735 ORTHO05D004669 2.5e-17 93.2 174 39.7
CAN.G642.1 Capsicum annuum HOM05D000735 ORTHO05D004669 4.2e-17 92.4 60 80.0
Ah.01g012200 Amaranthus hybridus HOM05D000735 ORTHO05D004669 5.5e-17 92.0 56 85.7
AUR62017691 Chenopodium quinoa HOM05D000735 ORTHO05D004669 1.2e-16 90.9 162 44.4
HPP92_027541 Vanilla planifolia HOM05D000735 ORTHO05D004669 1.8e-15 87.0 66 72.7
VMungo1215G1296 Vigna mungo HOM05D000735 ORTHO05D004669 2.0e-14 83.6 66 69.7
Mapoly0058s0105 Marchantia polymorpha HOM05D000735 ORTHO05D004669 7.0e-12 75.1 94 41.5
CBR_g54785 Chara braunii HOM05D000735 ORTHO05D004669 2.7e-11 73.2 82 39.0
SMO364G0202 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 4.5e-11 72.4 97 41.2
Pp3c9_15590 Physcomitrium patens HOM05D000735 ORTHO05D004669 1.3e-10 70.9 65 55.4
PRCOL_00002497 Prasinoderma coloniale HOM05D000735 ORTHO05D004669 5.2e-07 58.9 81 38.3


User provided reference genes

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