Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0454561 Helianthus annuus HOM05D009309 ORTHO05D011491 4.6e-25 117.1 58 100.0
Lsat_1_v5_gn_2_106500 Lactuca sativa HOM05D007947 ORTHO05D010018 5.6e-15 83.6 53 73.6
Dinv37295 Davidia involucrata HOM05D009309 ORTHO05D011491 3.7e-11 70.9 55 63.6
Rhsim05G0179800 Rhododendron simsii HOM05D009309 ORTHO05D011491 3.2e-10 67.8 49 67.3
Manes.08G008300 Manihot esculenta HOM05D009309 ORTHO05D011491 2.1e-09 65.1 56 58.9
Potri.006G127000 Populus trichocarpa HOM05D009309 ORTHO05D011491 7.8e-09 63.2 47 61.7
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 1.3e-08 62.4 46 60.9
MBI10_g22826_MAGBIO Magnolia biondii HOM05D009309 ORTHO05D011491 1.3e-08 62.4 47 66.0
Aqoxy1G01207 Aquilegia oxysepala HOM05D009309 ORTHO05D011491 5.1e-08 60.5 53 62.3
SGA_v2.0_scaffold75G24863 Striga asiatica HOM05D001565 ORTHO05D001725 6.6e-08 60.1 54 59.3
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 8.6e-08 59.7 54 57.4
CiPaw.09G174500 Carya illinoinensis HOM05D009309 ORTHO05D011491 8.6e-08 59.7 54 55.6
Cfa017573 Carpinus fangiana HOM05D009309 ORTHO05D011491 1.1e-07 59.3 52 55.8
Migut.J00541 Erythranthe guttata HOM05D009309 ORTHO05D011491 1.1e-07 59.3 63 55.6
Ciclev10013303m.g Citrus clementina HOM05D009309 ORTHO05D011491 1.5e-07 58.9 53 56.6
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 2.5e-07 58.2 54 53.7
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 2.5e-07 58.2 57 50.9
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 3.3e-07 57.8 56 51.8
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 4.3e-07 57.4 58 50.0
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 4.3e-07 57.4 46 58.7
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 4.3e-07 57.4 57 50.9
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 5.6e-07 57.0 57 50.9
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 5.6e-07 57.0 57 50.9
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 5.6e-07 57.0 57 50.9
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 5.6e-07 57.0 57 50.9
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 9.5e-07 56.2 57 49.1
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 9.5e-07 56.2 57 49.1
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 9.5e-07 56.2 58 53.4
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 9.5e-07 56.2 49 57.1
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 9.5e-07 56.2 46 56.5
Nn2g13719 Nelumbo nucifera HOM05D009309 ORTHO05D011491 9.5e-07 56.2 60 51.7
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 1.2e-06 55.8 49 59.2
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 1.2e-06 55.8 57 49.1
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 1.2e-06 55.8 57 49.1
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 1.2e-06 55.8 57 49.1
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 1.2e-06 55.8 49 59.2
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 1.2e-06 55.8 55 50.9
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 1.6e-06 55.5 49 59.2
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 1.6e-06 55.5 49 59.2
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 1.6e-06 55.5 56 50.0
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 2.1e-06 55.1 54 50.0
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 2.1e-06 55.1 54 50.0
MD12G1117300 Malus domestica HOM05D009309 ORTHO05D011491 2.1e-06 55.1 47 55.3
Thecc.05G062000 Theobroma cacao HOM05D009309 ORTHO05D011491 2.1e-06 55.1 46 58.7
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 2.8e-06 54.7 49 55.1
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 2.8e-06 54.7 49 55.1
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 2.8e-06 54.7 49 57.1
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 2.8e-06 54.7 57 47.4
Nn2g11514 Nelumbo nucifera HOM05D009309 ORTHO05D011491 2.8e-06 54.7 45 64.4
Solyc09g007880.1 Solanum lycopersicum HOM05D009309 ORTHO05D011491 2.8e-06 54.7 36 72.2
MD04G1096300 Malus domestica HOM05D009309 ORTHO05D011491 3.6e-06 54.3 47 53.2
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 3.6e-06 54.3 46 54.3
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 3.6e-06 54.3 54 46.3
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 4.7e-06 53.9 56 46.4
Os04g0518600 Oryza sativa ssp. japonica HOM05D009309 ORTHO05D011491 4.7e-06 53.9 40 60.0
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 6.2e-06 53.5 57 47.4
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 8.1e-06 53.1 49 53.1
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 8.1e-06 53.1 50 50.0
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 8.1e-06 53.1 49 55.1


User provided reference genes

Program Settings