Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0454411 Helianthus annuus HOM05D001033 ORTHO05D005438 8.6e-60 233.4 115 100.0
HanXRQChr11g0348981 Helianthus annuus HOM05D001033 ORTHO05D005438 5.0e-23 111.3 70 80.0
HanXRQChr00c0345g0573911 Helianthus annuus HOM05D001033 ORTHO05D005438 6.5e-23 110.9 70 78.6
HanXRQChr00c0702g0576861 Helianthus annuus HOM05D001033 ORTHO05D002045 6.5e-23 110.9 70 78.6
HanXRQChr00c0759g0577221 Helianthus annuus HOM05D001033 ORTHO05D005438 6.5e-23 110.9 70 78.6
HanXRQChr02g0041511 Helianthus annuus HOM05D001033 ORTHO05D002045 6.5e-23 110.9 70 78.6
HanXRQChr02g0044941 Helianthus annuus HOM05D001033 ORTHO05D002045 6.5e-23 110.9 70 78.6
HanXRQChr07g0201001 Helianthus annuus HOM05D001033 ORTHO05D002045 6.5e-23 110.9 70 78.6
HanXRQChr08g0210311 Helianthus annuus HOM05D001033 ORTHO05D002045 6.5e-23 110.9 70 78.6
HanXRQChr10g0283501 Helianthus annuus HOM05D001033 ORTHO05D002045 6.5e-23 110.9 70 78.6
HanXRQChr10g0289221 Helianthus annuus HOM05D001033 ORTHO05D002045 6.5e-23 110.9 70 78.6
HanXRQChr11g0326771 Helianthus annuus HOM05D001033 ORTHO05D002045 6.5e-23 110.9 70 78.6
HanXRQCPg0579981 Helianthus annuus HOM05D001033 ORTHO05D002045 6.5e-23 110.9 70 78.6
Gohir.D01G102268 Gossypium hirsutum HOM05D001033 ORTHO05D005438 3.5e-21 105.1 77 66.2
RcHm_v2.0_CPg0502161 Rosa chinensis HOM05D001033 ORTHO05D005438 7.9e-21 104.0 77 64.9
Gohir.A09G102300 Gossypium hirsutum HOM05D001033 ORTHO05D005438 1.0e-20 103.6 81 64.2
Phvul.011G056516 Phaseolus vulgaris HOM05D001033 ORTHO05D005438 3.0e-20 102.1 70 72.9
VMungo0498G0001 Vigna mungo HOM05D001033 ORTHO05D005438 3.0e-20 102.1 70 72.9
EL10As12g24023 Beta vulgaris HOM05D001033 ORTHO05D005438 3.9e-20 101.7 77 63.6
EL10As1g23050 Beta vulgaris HOM05D001033 ORTHO05D005438 3.9e-20 101.7 77 63.6
Hma1.2p1_2223F.1_g317430 Hydrangea macrophylla HOM05D001033 ORTHO05D005438 6.7e-20 100.9 70 70.0
PSO548G0108 Papaver somniferum HOM05D001033 ORTHO05D005438 6.7e-20 100.9 70 70.0
Glyma.13G068600 Glycine max HOM05D001033 ORTHO05D005438 8.7e-20 100.5 70 71.4
DCAR_032489 Daucus carota HOM05D001033 ORTHO05D005438 1.5e-19 99.8 70 68.6
Lalb_Chr03g0039391 Lupinus albus HOM05D001033 ORTHO05D005438 1.9e-19 99.4 70 70.0
Lalb_Chr07g0192301 Lupinus albus HOM05D001033 ORTHO05D005438 1.9e-19 99.4 70 70.0
Medtr3g035740 Medicago truncatula HOM05D001033 ORTHO05D005438 1.9e-19 99.4 77 62.3
QL93p0270_0001 Quercus lobata HOM05D001033 ORTHO05D005438 1.9e-19 99.4 74 64.9
CARHR282060 Cardamine hirsuta HOM05D001033 ORTHO05D005438 2.5e-19 99.0 70 68.6
Peaxi162Scf00334g01211 Petunia axillaris HOM05D001033 ORTHO05D002045 2.5e-19 99.0 70 67.1
PGR111G0123 Punica granatum HOM05D001033 ORTHO05D005438 3.3e-19 98.6 70 68.6
BNapus_Darmor_BZH_scaffold_287p00100 Brassica napus HOM05D001033 ORTHO05D005438 5.7e-19 97.8 70 67.1
CAN.G397.97 Capsicum annuum HOM05D001033 ORTHO05D005438 5.7e-19 97.8 70 67.1
CAN.G835.10 Capsicum annuum HOM05D001033 ORTHO05D005438 5.7e-19 97.8 70 67.1
Eucgr.A02745 Eucalyptus grandis HOM05D001033 ORTHO05D005438 5.7e-19 97.8 70 68.6
LjContig00318g0006081 Lotus japonicus HOM05D001033 ORTHO05D005438 5.7e-19 97.8 70 68.6
BNapus_Darmor_BZH_scaffold_253p00180 Brassica napus HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 67.1
C02p43490 Brassica napus HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 67.1
C04p22580 Brassica napus HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 67.1
C09p40500 Brassica napus HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 67.1
BolSC45t60863H Brassica oleracea HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 67.1
BolSC45t60948H Brassica oleracea HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 67.1
BolSC46t60995H Brassica oleracea HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 67.1
BolSC46t61040H Brassica oleracea HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 67.1
BolSC47t61102H Brassica oleracea HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 67.1
BraSC25t45843Z Brassica rapa HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 67.1
BraSC25t45872Z Brassica rapa HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 67.1
BraSC58t46415Z Brassica rapa HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 67.1
BraSC59t46597Z Brassica rapa HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 67.1
SalBow1G1818 Salvia bowleyana HOM05D001033 ORTHO05D005438 7.4e-19 97.4 70 68.6
Gohir.1Z049599 Gossypium hirsutum HOM05D001033 ORTHO05D005438 9.7e-19 97.1 70 68.6
Potri.013G163000 Populus trichocarpa HOM05D001033 ORTHO05D005438 9.7e-19 97.1 70 67.1
BolC7t41722H Brassica oleracea HOM05D001033 ORTHO05D005438 1.3e-18 96.7 70 67.1
Thhalv10010825m.g Eutrema salsugineum HOM05D001033 ORTHO05D005438 1.3e-18 96.7 70 67.1
AL2G20690 Arabidopsis lyrata HOM05D001033 ORTHO05D005438 2.2e-18 95.9 70 65.7
AL2G21100 Arabidopsis lyrata HOM05D001033 ORTHO05D005438 2.2e-18 95.9 70 65.7
AL2G21480 Arabidopsis lyrata HOM05D001033 ORTHO05D005438 2.2e-18 95.9 70 65.7
ATCG00440 Arabidopsis thaliana HOM05D001033 ORTHO05D005438 2.2e-18 95.9 70 65.7
BolC7t41667H Brassica oleracea HOM05D001033 ORTHO05D005438 3.7e-18 95.1 70 65.7
Gohir.A10G087950 Gossypium hirsutum HOM05D001033 ORTHO05D005438 6.3e-18 94.4 70 65.7
Gohir.D04G084000 Gossypium hirsutum HOM05D001033 ORTHO05D005438 6.3e-18 94.4 70 67.1
Nn010s41425 Nelumbo nucifera HOM05D001033 ORTHO05D005438 6.3e-18 94.4 70 65.7
Medtr4g051245 Medicago truncatula HOM05D001033 ORTHO05D005438 8.2e-18 94.0 70 65.7
Gohir.A07G060600 Gossypium hirsutum HOM05D001033 ORTHO05D005438 5.9e-16 87.8 62 71.0
Gohir.D05G268250 Gossypium hirsutum HOM05D001033 ORTHO05D005438 1.7e-15 86.3 83 55.4
Oeu028781.1 Olea europaea HOM05D001033 ORTHO05D005438 2.2e-15 85.9 70 62.9
Gorai.009G280700 Gossypium raimondii HOM05D001033 ORTHO05D005438 3.8e-15 85.1 83 54.2
Medtr5g090760 Medicago truncatula HOM05D000680 ORTHO05D005619 3.8e-15 85.1 56 76.8
Nitab4.5_0002149g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.8e-15 85.1 59 74.6
EL10Ac5g11371 Beta vulgaris HOM05D001033 ORTHO05D005438 4.2e-14 81.6 51 80.4
HanXRQChr04g0118141 Helianthus annuus HOM05D001033 ORTHO05D005438 3.6e-13 78.6 54 70.4
BcaB02g11351 Brassica carinata HOM05D001033 ORTHO05D002045 6.1e-13 77.8 47 83.0
BcaC04g20697 Brassica carinata HOM05D001033 ORTHO05D002045 6.1e-13 77.8 47 83.0
BcaC05g28797 Brassica carinata HOM05D001033 ORTHO05D002045 6.1e-13 77.8 47 83.0
Solyc09g010890.1 Solanum lycopersicum HOM05D001033 ORTHO05D005438 2.5e-11 72.4 52 71.2
Gohir.D02G106150 Gossypium hirsutum HOM05D001033 ORTHO05D005438 1.3e-10 70.1 46 80.4
Gorai.005G120500 Gossypium raimondii HOM05D001033 ORTHO05D005438 1.3e-10 70.1 46 80.4
Nn071s42395 Nelumbo nucifera HOM05D001033 ORTHO05D005438 1.8e-09 66.2 42 81.0
Nn1g03017 Nelumbo nucifera HOM05D001033 ORTHO05D005438 1.5e-08 63.2 40 80.0
Nn4g22664 Nelumbo nucifera HOM05D001033 ORTHO05D005438 5.0e-07 58.2 48 58.3
Medtr7g076390 Medicago truncatula HOM05D001033 ORTHO05D005438 3.2e-06 55.5 49 61.2


User provided reference genes

Program Settings