Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 1.8e-229 798.9 398 100.0
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 1.7e-224 782.3 398 98.0
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 8.1e-174 614.0 393 74.3
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.1e-173 612.1 403 73.0
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.1e-173 612.1 403 73.0
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 2.0e-172 609.4 402 74.4
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 2.6e-172 609.0 405 72.8
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 8.4e-171 604.0 403 73.2
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 5.5e-170 601.3 403 73.2
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 9.3e-170 600.5 398 71.9
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 1.6e-169 599.7 402 72.9
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.1e-169 599.4 403 72.0
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 2.1e-169 599.4 398 72.9
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 2.7e-169 599.0 403 73.0
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 1.3e-168 596.7 400 70.5
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 1.8e-168 596.3 393 73.3
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 2.3e-168 595.9 394 72.1
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 3.9e-168 595.1 400 73.0
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 3.9e-168 595.1 402 70.6
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 1.1e-167 593.6 393 72.5
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.5e-167 593.2 405 72.1
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.9e-167 592.8 404 71.8
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 1.9e-167 592.8 397 71.8
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 5.6e-167 591.3 404 71.8
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 9.6e-167 590.5 438 67.6
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 1.3e-166 590.1 396 72.0
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.3e-166 590.1 404 71.8
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.6e-166 589.7 402 70.4
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 4.8e-166 588.2 402 71.6
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 1.4e-165 586.6 404 70.0
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 2.4e-165 585.9 393 71.2
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 4.0e-165 585.1 393 71.8
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.3e-165 584.7 468 63.9
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 1.2e-164 583.6 397 70.0
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.5e-164 583.2 392 71.4
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.0e-164 582.8 393 71.5
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 2.0e-164 582.8 391 71.6
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 3.4e-164 582.0 395 69.6
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 5.8e-164 581.3 393 71.8
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 5.8e-164 581.3 397 70.3
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 5.8e-164 581.3 393 71.2
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 5.8e-164 581.3 395 72.2
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 3.8e-163 578.6 395 69.4
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 7.1e-162 574.3 398 68.8
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 9.3e-162 573.9 398 69.6
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 1.2e-161 573.5 397 70.3
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 3.5e-161 572.0 409 68.2
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 4.6e-161 571.6 392 69.4
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 1.3e-160 570.1 400 68.0
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 1.8e-160 569.7 392 68.9
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 5.1e-160 568.2 404 70.0
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 5.1e-160 568.2 401 69.8
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 6.7e-160 567.8 401 69.1
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 8.7e-160 567.4 402 68.7
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 1.5e-159 566.6 402 68.4
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 1.5e-159 566.6 393 68.7
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.9e-159 566.2 395 67.8
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 2.5e-159 565.8 397 68.3
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 3.3e-159 565.5 394 68.8
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 4.3e-159 565.1 394 69.5
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 4.3e-159 565.1 393 70.0
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 4.3e-159 565.1 395 67.6
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 4.3e-159 565.1 395 67.3
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 5.7e-159 564.7 405 68.1
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 9.7e-159 563.9 395 67.6
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.3e-158 563.5 394 69.3
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.6e-158 563.1 408 67.4
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 1.8e-157 559.7 394 68.8
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 4.1e-157 558.5 405 68.1
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 6.9e-157 557.8 394 69.5
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 4.5e-156 555.1 418 65.8
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 5.9e-156 554.7 404 68.6
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 1.7e-155 553.1 401 67.1
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 8.5e-155 550.8 393 69.0
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.2e-154 548.5 421 66.0
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 5.5e-154 548.1 425 64.7
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 9.4e-154 547.4 448 61.6
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 3.0e-152 542.3 418 65.6
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 5.1e-152 541.6 394 68.0
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 6.5e-147 524.6 413 62.0
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 2.5e-146 522.7 409 62.8
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 4.2e-146 521.9 393 66.4
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 7.9e-145 517.7 347 69.7
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 1.0e-144 517.3 381 67.2
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 6.7e-144 514.6 405 64.7
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 1.3e-142 510.4 391 65.7
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 5.0e-139 498.4 396 63.9
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 4.4e-135 485.3 409 59.4
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 5.7e-135 485.0 365 63.3
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 6.3e-134 481.5 403 62.5
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 5.3e-133 478.4 394 61.4
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 2.9e-131 472.6 396 61.9
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.9e-131 472.6 309 74.4
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 7.2e-130 468.0 320 69.7
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 2.3e-128 463.0 340 64.1
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 2.2e-126 456.4 391 57.0
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 3.8e-123 445.7 347 62.5
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 2.5e-122 443.0 351 61.3
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 4.7e-121 438.7 312 70.2
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 1.8e-120 436.8 386 56.5
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 1.8e-120 436.8 304 70.7
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 9.1e-117 424.5 302 68.5
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 2.0e-116 423.3 300 69.0
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 2.0e-116 423.3 387 54.0
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 8.6e-115 417.9 314 66.6
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.1e-114 417.5 415 54.5
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 5.7e-111 405.2 327 62.1
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 1.8e-109 400.2 309 64.7
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 1.0e-104 384.4 379 52.5
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.9e-102 376.3 270 65.9
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 2.0e-100 370.2 276 65.9
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 4.0e-96 355.9 549 37.2
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 5.2e-96 355.5 397 50.4
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 2.7e-92 343.2 280 63.2
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.1e-90 337.8 248 67.3
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 6.2e-89 332.0 385 50.6
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.7e-86 322.8 346 52.9
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 7.1e-85 318.5 179 83.8
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.3e-83 314.3 243 61.3
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 3.3e-82 309.7 344 50.0
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 3.1e-80 303.1 334 51.5
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 3.4e-79 299.7 234 64.5
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 9.6e-74 281.6 393 42.2
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.9e-69 267.3 397 38.5
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 1.7e-67 260.8 218 57.8
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 3.9e-67 259.6 386 40.4
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 1.1e-58 231.5 447 34.7
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 2.6e-55 220.3 396 36.4
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 4.5e-55 219.5 177 62.1
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 4.9e-54 216.1 122 82.8
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 6.5e-54 215.7 205 52.2
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.2e-53 213.4 122 80.3
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 1.6e-52 211.1 142 69.0
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.0e-51 208.4 144 71.5
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.1e-50 204.9 325 39.7
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 5.7e-50 202.6 381 35.4
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 7.4e-50 202.2 138 69.6
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 5.8e-47 192.6 121 73.6
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.6e-44 184.5 120 70.8
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 3.5e-44 183.3 110 76.4
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 5.9e-39 166.0 225 46.2
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 3.9e-35 153.3 88 84.1
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 1.5e-31 141.4 129 62.0
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 1.7e-25 121.3 396 27.0
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.8e-19 101.3 60 80.0
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.8e-19 101.3 62 75.8
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.8e-19 101.3 62 75.8
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 2.6e-18 97.4 74 60.8
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 3.5e-15 87.0 117 47.0
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 5.0e-14 83.2 59 64.4
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 1.2e-12 78.6 324 24.7
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 1.3e-09 68.6 43 62.8
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 1.1e-08 65.5 52 53.8
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 1.4e-08 65.1 52 53.8
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 1.4e-08 65.1 52 53.8


User provided reference genes

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