Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 9.7e-225 783.1 382 100.0
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 3.6e-171 605.1 388 79.6
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.4e-170 603.2 389 79.7
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.6e-155 553.1 386 71.0
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 2.8e-155 552.4 384 71.4
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 4.8e-155 551.6 387 70.8
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 6.2e-155 551.2 386 70.5
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.5e-153 546.6 332 77.4
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 3.4e-153 545.4 344 76.2
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 4.9e-152 541.6 374 70.6
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 2.4e-151 539.3 384 70.1
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 2.4e-151 539.3 383 69.2
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 3.2e-151 538.9 389 69.2
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 5.4e-151 538.1 391 69.1
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 7.1e-151 537.7 374 69.5
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 7.1e-151 537.7 385 70.6
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 7.1e-151 537.7 397 69.0
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 1.2e-150 537.0 376 70.7
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 1.2e-150 537.0 329 77.5
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 3.5e-150 535.4 376 70.7
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 4.6e-150 535.0 382 70.7
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 4.6e-150 535.0 364 70.9
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 1.0e-149 533.9 380 70.3
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 1.3e-149 533.5 349 73.6
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.3e-149 533.5 387 68.0
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 1.8e-149 533.1 388 69.3
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 2.3e-149 532.7 369 71.3
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 3.0e-149 532.3 364 70.6
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 8.7e-149 530.8 391 70.6
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 8.7e-149 530.8 379 69.9
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 8.7e-149 530.8 371 70.4
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.9e-148 529.6 378 69.8
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 3.3e-148 528.9 384 68.8
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 3.3e-148 528.9 394 68.8
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 5.6e-148 528.1 341 73.9
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 7.4e-148 527.7 396 68.2
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 2.8e-147 525.8 361 70.1
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 3.7e-147 525.4 391 67.8
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 6.2e-147 524.6 385 68.8
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 8.1e-147 524.2 370 68.9
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 1.1e-146 523.9 377 69.0
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 1.1e-146 523.9 378 68.8
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 1.8e-146 523.1 397 68.0
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.4e-146 522.7 386 68.1
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 3.1e-146 522.3 386 66.3
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 4.0e-146 521.9 356 69.7
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 5.3e-146 521.5 391 68.5
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 9.0e-146 520.8 386 67.9
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 3.4e-145 518.8 383 65.8
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 3.4e-145 518.8 399 65.9
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 3.4e-145 518.8 371 68.2
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 3.4e-145 518.8 386 66.1
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 4.5e-145 518.5 383 65.8
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 4.5e-145 518.5 395 66.3
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 5.8e-145 518.1 380 66.8
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.6e-145 517.7 388 66.5
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.3e-144 516.9 382 69.1
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.3e-144 516.9 385 66.5
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 1.7e-144 516.5 378 68.3
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 2.2e-144 516.2 380 66.6
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.9e-144 515.8 393 66.2
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 3.8e-144 515.4 317 75.7
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 3.8e-144 515.4 382 65.2
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 6.5e-144 514.6 374 68.4
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 9.3e-143 510.8 356 68.0
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 2.7e-142 509.2 357 67.8
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 7.9e-142 507.7 391 66.8
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 1.8e-141 506.5 331 71.0
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 2.3e-141 506.1 333 71.2
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 3.0e-141 505.8 329 72.0
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 3.9e-141 505.4 388 64.2
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 5.1e-141 505.0 382 66.8
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 6.7e-141 504.6 357 67.2
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 1.1e-140 503.8 387 65.1
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 1.1e-140 503.8 376 65.2
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.9e-140 503.1 357 66.9
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 2.5e-140 502.7 378 65.1
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 4.3e-140 501.9 374 66.0
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 4.3e-140 501.9 407 62.9
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 7.4e-140 501.1 332 70.8
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 9.6e-140 500.7 383 64.8
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 9.6e-140 500.7 388 64.7
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 1.3e-139 500.4 332 70.8
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 1.3e-139 500.4 380 65.0
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.3e-139 500.4 334 70.4
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.1e-138 497.3 324 71.6
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 1.4e-138 496.9 378 65.1
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.4e-138 496.9 369 66.7
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.1e-138 495.7 383 65.8
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 5.3e-138 495.0 381 63.5
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 6.9e-138 494.6 387 64.3
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 1.5e-137 493.4 386 62.7
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.6e-137 492.7 387 64.1
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.6e-137 492.7 387 64.1
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 2.6e-137 492.7 331 68.6
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 7.6e-137 491.1 395 65.1
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.0e-136 490.7 384 63.5
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.2e-136 489.6 385 65.7
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 2.2e-136 489.6 383 63.4
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 8.4e-136 487.6 370 64.3
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.4e-135 486.9 504 53.0
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 1.9e-135 486.5 384 61.7
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 9.3e-135 484.2 330 70.3
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 2.1e-134 483.0 353 66.3
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.0e-133 480.7 341 68.6
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 1.3e-133 480.3 379 64.6
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 1.8e-133 479.9 372 65.1
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 7.7e-129 464.5 342 68.1
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 7.4e-124 448.0 313 71.2
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 5.9e-121 438.3 309 69.9
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 2.9e-120 436.0 300 69.7
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 2.6e-116 422.9 335 63.0
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 3.8e-112 409.1 307 61.9
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 6.5e-112 408.3 331 61.6
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 4.2e-111 405.6 307 62.2
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 3.3e-108 396.0 302 63.6
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.7e-107 392.5 264 72.0
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 8.2e-107 391.3 329 58.1
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 5.3e-106 388.7 306 62.7
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 4.7e-102 375.6 308 58.4
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 9.8e-100 367.9 306 60.1
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 2.1e-94 350.1 311 55.6
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 1.2e-89 334.3 278 63.3
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 2.3e-88 330.1 254 62.2
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 3.3e-87 326.2 315 51.4
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 4.2e-87 325.9 302 55.6
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 5.6e-87 325.5 264 60.6
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 6.4e-83 312.0 309 52.1
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 6.6e-80 302.0 168 82.7
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 3.1e-69 266.5 180 70.6
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.1e-61 241.5 248 51.6
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.7e-59 234.2 127 85.0
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 4.0e-53 213.0 124 75.8
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.2e-51 207.2 336 41.1
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 2.0e-44 184.1 167 54.5
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 6.0e-41 172.6 99 76.8
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 4.0e-37 159.8 167 50.3
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 3.4e-36 156.8 148 53.4
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 7.6e-36 155.6 167 49.1
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 2.8e-30 137.1 167 44.3
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 2.4e-29 134.0 72 87.5
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 4.0e-29 133.3 131 49.6
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 3.7e-22 110.2 117 53.0
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.4e-21 107.5 64 79.7
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 5.9e-20 102.8 66 71.2
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 5.3e-13 79.7 88 44.3
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 5.3e-13 79.7 88 44.3
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.2e-12 78.6 44 75.0
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 2.6e-12 77.4 44 75.0
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 4.5e-12 76.6 43 76.7
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 1.3e-11 75.1 41 80.5
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 2.2e-11 74.3 35 88.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.6e-09 68.2 40 80.0
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 6.1e-09 66.2 58 53.4


User provided reference genes

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