Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 2.3e-260 901.7 471 100.0
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 1.8e-233 812.4 471 89.6
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 6.0e-224 780.8 470 87.0
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 3.1e-212 741.9 472 80.5
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 5.4e-209 731.1 449 82.6
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 5.1e-207 724.5 464 79.5
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 1.5e-206 723.0 449 81.1
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 5.8e-203 711.1 472 77.8
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 8.4e-202 707.2 472 77.1
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 2.4e-201 705.7 472 77.8
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 5.4e-201 704.5 475 76.8
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 1.6e-200 703.0 472 77.3
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 2.7e-200 702.2 464 77.2
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 1.3e-199 699.9 471 76.9
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.1e-198 696.8 476 76.3
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 1.1e-198 696.8 471 76.2
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 1.1e-198 696.8 471 75.4
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 9.6e-198 693.7 471 75.8
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 8.1e-197 690.6 460 77.6
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.1e-196 690.3 473 75.1
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 1.1e-196 690.3 473 74.8
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.8e-196 689.5 472 76.5
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 2.4e-196 689.1 473 74.8
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 2.4e-196 689.1 462 77.1
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 4.0e-196 688.3 471 75.4
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 5.2e-196 688.0 460 77.4
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 9.0e-196 687.2 473 74.4
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.2e-195 686.8 471 75.2
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 1.5e-195 686.4 472 76.3
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 5.8e-195 684.5 443 77.2
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 7.6e-195 684.1 463 76.0
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 7.6e-195 684.1 477 75.1
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 9.9e-195 683.7 464 75.6
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 9.9e-195 683.7 472 74.4
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 1.3e-194 683.3 453 76.8
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 2.9e-194 682.2 477 73.2
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 4.9e-194 681.4 471 75.2
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 6.4e-194 681.0 468 75.9
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 1.1e-193 680.2 472 74.8
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 3.2e-193 678.7 452 76.1
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 5.4e-193 677.9 471 73.2
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 9.3e-193 677.2 471 73.7
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 9.3e-193 677.2 473 74.8
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 9.3e-193 677.2 471 74.1
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.2e-192 676.8 466 75.8
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 3.5e-192 675.2 471 74.1
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.0e-191 673.7 471 73.0
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.0e-191 673.7 458 76.0
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 1.3e-191 673.3 471 73.7
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.3e-191 673.3 471 74.3
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.7e-191 672.9 471 73.2
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 1.7e-191 672.9 503 72.2
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 2.3e-191 672.5 472 74.6
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 2.3e-191 672.5 494 72.5
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 3.9e-191 671.8 464 73.5
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 5.1e-191 671.4 471 74.1
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 6.6e-191 671.0 471 72.4
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 6.6e-191 671.0 471 73.2
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.1e-190 670.2 471 73.5
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 1.1e-190 670.2 446 76.7
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.9e-190 669.5 478 73.4
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 4.3e-190 668.3 472 73.1
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 4.3e-190 668.3 471 73.2
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 1.3e-189 666.8 473 74.2
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.3e-189 666.8 444 76.8
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.3e-189 666.8 473 74.0
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 1.3e-189 666.8 464 73.3
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.6e-189 666.4 471 72.6
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 2.8e-189 665.6 461 74.0
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 3.6e-189 665.2 473 73.4
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 8.1e-189 664.1 471 73.5
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 1.4e-188 663.3 471 73.5
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 2.4e-188 662.5 444 76.1
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 2.4e-188 662.5 471 72.6
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 3.1e-188 662.1 432 78.2
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 3.1e-188 662.1 473 72.3
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 3.1e-188 662.1 471 73.0
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 2.0e-187 659.4 473 72.3
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 9.9e-187 657.1 443 74.9
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.3e-186 656.8 465 73.1
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.7e-186 656.4 464 73.7
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 2.9e-186 655.6 473 71.5
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 4.9e-186 654.8 444 74.8
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 4.9e-186 654.8 479 71.4
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 1.1e-185 653.7 497 68.8
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 1.1e-185 653.7 445 76.4
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 3.2e-185 652.1 409 81.4
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 5.4e-185 651.4 463 72.4
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 1.5e-182 643.3 484 69.6
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.9e-182 642.9 438 75.1
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 1.5e-179 633.3 553 63.7
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 2.7e-176 622.5 431 74.0
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 5.1e-175 618.2 409 77.3
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 2.5e-174 615.9 399 78.9
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 3.3e-174 615.5 422 73.9
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 1.3e-173 613.6 420 75.2
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.5e-168 595.5 423 73.3
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 1.8e-167 593.2 424 71.7
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.3e-165 587.0 418 72.7
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 9.0e-164 580.9 409 74.6
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 2.0e-163 579.7 422 72.3
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 5.1e-159 565.1 385 73.2
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.1e-158 563.9 444 65.3
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 2.8e-157 559.3 438 66.7
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.2e-155 553.9 389 74.3
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.9e-151 538.9 472 64.2
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.0e-146 524.2 346 78.3
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 2.1e-136 490.0 439 58.3
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 4.0e-135 485.7 360 70.8
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 2.5e-129 466.5 433 61.2
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 7.2e-129 464.9 329 71.7
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 8.0e-128 461.5 437 58.1
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 6.6e-122 441.8 434 55.5
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 2.1e-120 436.8 326 71.8
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 7.8e-107 391.7 253 79.4
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 8.3e-101 371.7 388 55.9
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.5e-89 333.6 242 72.3
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.9e-85 320.1 202 80.2
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.4e-84 317.0 195 82.6
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 3.0e-82 310.1 211 75.4
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 4.9e-77 292.7 204 74.5
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 1.1e-68 265.0 218 62.8
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 1.7e-61 241.1 147 79.6
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 6.4e-61 239.2 182 70.3
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 4.3e-57 226.5 459 36.4
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.5e-49 200.7 124 79.0
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 6.7e-42 176.0 264 44.7
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 2.8e-40 170.6 264 43.6
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 3.1e-39 167.2 158 64.6
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.4e-36 158.3 140 60.7
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.5e-36 157.5 137 61.3
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 5.7e-33 146.4 149 55.7
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 9.7e-33 145.6 102 74.5
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.8e-29 133.7 124 58.9
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 2.3e-26 124.4 101 67.3
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 2.0e-25 121.3 121 60.3
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 4.4e-25 120.2 103 62.1
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 6.1e-19 99.8 87 59.8
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 1.4e-18 98.6 46 95.7
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 1.4e-18 98.6 46 95.7
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 1.5e-17 95.1 133 46.6
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 4.4e-17 93.6 133 45.9
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 4.4e-17 93.6 133 45.9
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 4.4e-17 93.6 133 45.9
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 5.7e-17 93.2 133 45.9
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 5.7e-17 93.2 133 45.9
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 7.5e-17 92.8 133 45.1
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 2.8e-16 90.9 137 44.5
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 8.3e-16 89.4 102 50.0
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 8.3e-16 89.4 102 50.0
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 7.0e-15 86.3 76 63.2
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 2.0e-14 84.7 135 43.7
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 2.9e-13 80.9 59 61.0
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 3.8e-13 80.5 107 48.6
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 3.8e-13 80.5 70 65.7
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 5.0e-13 80.1 166 37.3
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 2.5e-12 77.8 80 58.8
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 3.2e-12 77.4 107 47.7
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 5.5e-12 76.6 69 65.2
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 1.6e-11 75.1 90 52.2
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 8.0e-11 72.8 176 33.0
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 1.5e-09 68.6 57 66.7
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 1.5e-09 68.6 99 44.4
Lsat_1_v5_gn_3_20180 Lactuca sativa HOM05D000819 ORTHO05D000661 4.4e-09 67.0 121 41.3
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 9.8e-09 65.9 64 53.1
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 4.9e-08 63.5 46 60.9
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 4.1e-07 60.5 96 44.8
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 2.0e-06 58.2 48 66.7
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 4.5e-06 57.0 39 71.8
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 5.9e-06 56.6 46 65.2


User provided reference genes

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