Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 6.3e-122 441.0 267 100.0
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 2.3e-87 326.2 222 79.3
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 5.4e-81 305.1 222 89.2
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 4.8e-77 292.0 226 83.6
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 2.0e-75 286.6 225 68.4
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 5.8e-75 285.0 219 69.9
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 2.7e-72 276.2 224 81.2
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.7e-71 273.5 227 65.2
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 2.3e-71 273.1 229 63.3
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 5.1e-71 271.9 227 64.8
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.9e-70 270.0 227 63.9
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.9e-70 270.0 227 62.1
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.5e-70 269.6 227 66.1
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 4.3e-70 268.9 227 63.9
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.6e-70 268.5 227 65.6
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 7.3e-70 268.1 227 63.9
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.3e-69 267.3 228 61.8
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.3e-69 267.3 229 62.9
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.6e-69 266.9 252 57.9
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.8e-69 266.2 220 62.7
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 3.6e-69 265.8 222 62.6
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 3.6e-69 265.8 222 63.5
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 3.6e-69 265.8 222 63.5
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 4.8e-69 265.4 222 63.5
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 6.2e-69 265.0 222 62.6
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.4e-68 263.8 217 63.1
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.4e-68 263.8 217 63.1
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.8e-68 263.5 226 65.0
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.5e-67 260.4 220 61.8
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 2.0e-67 260.0 222 61.3
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 2.6e-67 259.6 221 62.4
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 5.8e-67 258.5 222 61.7
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.3e-66 257.3 226 59.7
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.7e-66 256.9 231 61.0
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 2.2e-66 256.5 224 62.1
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 2.2e-66 256.5 230 60.4
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 2.2e-66 256.5 226 61.1
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.9e-66 256.1 220 60.5
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 4.9e-66 255.4 220 62.3
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 6.4e-66 255.0 232 61.6
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 8.4e-66 254.6 230 61.7
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.1e-65 254.2 227 60.8
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.1e-65 254.2 221 61.5
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.4e-65 253.8 226 60.2
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 1.9e-65 253.4 224 61.6
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.9e-65 253.4 220 61.8
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 2.4e-65 253.1 219 62.6
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 3.2e-65 252.7 250 58.0
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 4.2e-65 252.3 223 62.8
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 5.5e-65 251.9 236 58.5
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 5.5e-65 251.9 219 60.3
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 7.1e-65 251.5 236 59.7
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 7.1e-65 251.5 218 62.4
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 9.3e-65 251.1 218 61.5
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.2e-64 250.8 233 60.9
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-64 250.4 218 61.0
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.6e-64 250.4 239 59.0
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 2.7e-64 249.6 219 60.3
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 3.5e-64 249.2 221 59.7
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 4.6e-64 248.8 225 60.4
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 1.0e-63 247.7 215 60.5
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.3e-63 247.3 219 58.0
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.3e-63 247.3 236 59.3
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 3.0e-63 246.1 218 61.5
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 3.9e-63 245.7 227 57.7
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 6.7e-63 245.0 219 57.5
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 8.7e-63 244.6 215 60.5
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 8.7e-63 244.6 211 62.6
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 8.7e-63 244.6 226 56.2
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.9e-62 243.4 220 57.3
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.9e-62 243.4 227 57.3
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.9e-62 243.4 224 59.4
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 2.5e-62 243.0 240 55.8
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.5e-62 243.0 231 60.2
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.5e-62 243.0 226 56.6
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 2.5e-62 243.0 221 59.3
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 4.3e-62 242.3 221 59.3
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 9.6e-62 241.1 221 60.6
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 2.1e-61 240.0 218 56.4
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 6.2e-61 238.4 218 59.6
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-60 237.7 220 56.4
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.1e-60 237.7 220 56.4
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.1e-60 237.7 219 57.5
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.4e-60 237.3 219 56.2
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 2.4e-60 236.5 220 55.9
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 3.1e-60 236.1 220 55.9
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.1e-60 236.1 218 56.9
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 5.3e-60 235.3 220 59.5
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 5.3e-60 235.3 220 58.6
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 5.3e-60 235.3 221 57.9
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.2e-59 234.2 218 56.9
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 2.6e-59 233.0 229 54.1
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 3.4e-59 232.6 220 55.5
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 3.4e-59 232.6 220 55.0
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 7.6e-59 231.5 222 56.3
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.0e-58 231.1 220 55.9
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.0e-58 231.1 220 54.5
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 2.2e-58 229.9 219 60.3
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 6.5e-58 228.4 229 54.1
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 8.4e-58 228.0 222 55.0
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.1e-57 227.6 222 53.6
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 1.1e-57 227.6 224 56.7
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.4e-57 227.3 217 70.5
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 4.2e-57 225.7 222 54.1
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 2.7e-56 223.0 274 48.9
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.0e-55 221.1 258 51.6
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.8e-55 220.3 220 69.1
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.8e-55 220.3 229 53.7
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 8.7e-55 218.0 231 51.5
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 9.6e-54 214.5 214 57.0
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.3e-53 214.2 232 50.4
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 3.7e-53 212.6 227 52.9
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 4.8e-53 212.2 163 68.7
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 2.6e-51 206.5 186 58.1
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 1.0e-50 204.5 229 49.3
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 1.1e-46 191.0 135 75.6
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 6.3e-45 185.3 140 68.6
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.2e-43 181.0 220 60.0
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 2.0e-43 180.3 163 58.3
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 2.6e-43 179.9 161 60.2
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 7.7e-43 178.3 244 41.0
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.3e-42 177.6 243 42.4
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 2.2e-42 176.8 155 60.0
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 9.4e-41 171.4 162 59.9
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.0e-39 167.9 143 63.6
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.0e-39 167.9 124 72.6
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.7e-38 162.2 141 63.1
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.2e-35 154.5 220 45.5
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 7.7e-35 151.8 145 57.2
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 7.7e-35 151.8 235 42.6
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 5.1e-31 139.0 221 40.3
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 8.8e-31 138.3 145 54.5
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 2.4e-28 130.2 115 60.9
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.5e-27 126.3 187 43.3
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.7e-26 124.0 193 42.0
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.7e-26 124.0 218 38.5
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 6.5e-26 122.1 152 49.3
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 8.5e-26 121.7 215 35.8
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 2.5e-25 120.2 116 57.8
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 4.2e-25 119.4 115 59.1
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 1.2e-24 117.9 225 36.9
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.5e-22 110.9 84 69.0
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.5e-22 110.9 84 69.0
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.5e-22 110.9 191 38.2
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 2.6e-22 110.2 184 39.1
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.4e-22 109.4 141 49.6
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 9.7e-22 108.2 93 64.5
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 3.7e-21 106.3 134 48.5
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 3.1e-20 103.2 131 47.3
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 5.3e-20 102.4 224 33.5
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.9e-18 96.7 78 66.7
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.1e-17 94.7 96 58.3
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 4.2e-17 92.8 86 54.7
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 2.1e-16 90.5 170 39.4
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.7e-16 90.1 135 43.7
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 4.0e-15 86.3 53 75.5
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.0e-15 86.3 53 77.4
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 4.0e-15 86.3 53 75.5
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 6.8e-15 85.5 52 75.0
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 6.8e-15 85.5 57 78.9
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 3.4e-14 83.2 53 73.6
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 3.4e-14 83.2 53 73.6
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 4.4e-14 82.8 86 52.3
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.7e-13 80.9 79 51.9
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 2.2e-13 80.5 74 56.8
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 2.8e-13 80.1 75 57.3
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.7e-13 79.7 50 74.0
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 6.3e-13 79.0 138 43.5
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 7.7e-11 72.0 84 51.2
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 1.3e-10 71.2 50 64.0
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 8.5e-10 68.6 142 36.6
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 4.2e-09 66.2 75 49.3
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 3.6e-08 63.2 58 53.4
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 3.6e-08 63.2 58 53.4
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 1.0e-07 61.6 102 43.1
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 2.6e-06 57.0 72 44.4
Oeu032224.2 Olea europaea HOM05D003667 ORTHO05D004397 5.7e-06 55.8 44 65.9


User provided reference genes

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